from typing import Any, Callable, List, Dict, Union, Optional, Sequence, Tuple from numpy import ndarray from collections import OrderedDict from scipy import sparse import os import sklearn # import numpy import typing # Custom import commands if any import warnings import numpy as np from sklearn.utils import check_array from sklearn.exceptions import NotFittedError from sklearn.utils.validation import check_is_fitted from sklearn.linear_model import LinearRegression # from numba import njit from pyod.utils.utility import argmaxn from d3m.container.numpy import ndarray as d3m_ndarray from d3m.container import DataFrame as d3m_dataframe from d3m.metadata import hyperparams, params, base as metadata_base from d3m import utils from d3m.base import utils as base_utils from d3m.exceptions import PrimitiveNotFittedError from d3m.primitive_interfaces.base import CallResult, DockerContainer # from d3m.primitive_interfaces.supervised_learning import SupervisedLearnerPrimitiveBase from d3m.primitive_interfaces.unsupervised_learning import UnsupervisedLearnerPrimitiveBase from d3m.primitive_interfaces.transformer import TransformerPrimitiveBase from d3m.primitive_interfaces.base import ProbabilisticCompositionalityMixin, ContinueFitMixin from d3m import exceptions import pandas from d3m import container, utils as d3m_utils from pyod.models.base import BaseDetector from detection_algorithm.UODBasePrimitive import Params_ODBase, Hyperparams_ODBase, UnsupervisedOutlierDetectorBase from detection_algorithm.core.LSTMOD import LSTMOutlierDetector from sklearn.utils import check_array, column_or_1d from sklearn.utils.validation import check_is_fitted from pyod.models.base import BaseDetector import uuid Inputs = d3m_dataframe Outputs = d3m_dataframe class Params(Params_ODBase): ######## Add more Attributes ####### pass class Hyperparams(Hyperparams_ODBase): ######## Add more Hyperparamters ####### train_contamination = hyperparams.Uniform( # Hyperparameter[float]( lower=0., upper=0.5, default=0.0, description='Contamination used to calculate relative_error_threshold.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) min_attack_time = hyperparams.Hyperparameter[int]( default=5, description='The minimum amount of recent time steps that is used to define a collective attack.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) danger_coefficient_weight = hyperparams.Uniform( lower=0., upper=1., default=0.5, description='Weight of danger coefficient in decision score.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) loss_func = hyperparams.Enumeration[str]( values=['mean_squared_error'], default='mean_squared_error', description='String (name of objective function).', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) optimizer = hyperparams.Enumeration[str]( values=['adam', 'sgd', 'rmsprop', 'nadam', 'adamax', 'adadelta', 'adagrad'], default='adam', description='String (name of optimizer).', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) epochs = hyperparams.Hyperparameter[int]( default=10, description='Number of epochs to train the model.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) batch_size = hyperparams.Hyperparameter[int]( default=32, description='Number of samples per gradient update.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) dropout_rate = hyperparams.Uniform( # Hyperparameter[float]( lower=0., upper=1., default=0.1, description='The dropout to be used across all layers.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) feature_dim = hyperparams.Hyperparameter[int]( default=1, description='Feature dim of time series data.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) hidden_dim = hyperparams.Hyperparameter[int]( default=16, description='Hidden dim of LSTM.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) n_hidden_layer = hyperparams.Hyperparameter[int]( default=0, description='Hidden layer number of LSTM.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) activation = hyperparams.Union[Union[str, None]]( configuration=OrderedDict( init=hyperparams.Enumeration[str]( values=['relu', 'sigmoid', 'selu', 'tanh', 'softplus', 'softsign'], default='relu', description='Method to vote relative_error in a collect attack.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ), ninit=hyperparams.Hyperparameter[None]( default=None, ), ), default='ninit', description='Activations function of LSTMs input and hidden layers.', semantic_types=['https://metadata.datadrivendiscovery.org/types/ControlParameter'], ) diff_group_method = hyperparams.Enumeration[str]( values=['average', 'max', 'min'], default='average', description='Method to vote relative_error in a collect attack.', semantic_types=['https://metadata.datadrivendiscovery.org/types/TuningParameter'] ) pass class LSTMODetector(UnsupervisedOutlierDetectorBase[Inputs, Outputs, Params, Hyperparams]): """ Parameters ---------- window_size : int The moving window size. step_size : int, optional (default=1) The displacement for moving window. contamination : float in (0., 0.5), optional (default=0.1) The amount of contamination of the data set, i.e. the proportion of outliers in the data set. When fitting this is used to define the threshold on the decision function. Attributes ---------- decision_scores_ : numpy array of shape (n_samples,) The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted. labels_ : int, either 0 or 1 The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying ``threshold_`` on ``decision_scores_``. """ metadata = metadata_base.PrimitiveMetadata({ "name": "LSTMODetector", "python_path": "d3m.primitives.tods.detection_algorithm.LSTMODetector", "source": {'name': "DATALAB @Taxes A&M University", 'contact': 'mailto:khlai037@tamu.edu', 'uris': ['https://gitlab.com/lhenry15/tods.git', 'https://gitlab.com/lhenry15/tods/-/blob/Junjie/anomaly-primitives/anomaly_primitives/LSTMOD.py']}, "algorithm_types": [metadata_base.PrimitiveAlgorithmType.ISOLATION_FOREST, ], # up to update "primitive_family": metadata_base.PrimitiveFamily.ANOMALY_DETECTION, "version": "0.0.1", "hyperparams_to_tune": ['contamination', 'train_contamination', 'min_attack_time', 'danger_coefficient_weight', 'loss_func', 'optimizer', 'epochs', 'batch_size', 'dropout_rate', 'feature_dim', 'hidden_dim', 'n_hidden_layer', 'activation', 'diff_group_method'], "id": str(uuid.uuid3(uuid.NAMESPACE_DNS, 'LSTMODetector')), }) def __init__(self, *, hyperparams: Hyperparams, # random_seed: int = 0, docker_containers: Dict[str, DockerContainer] = None) -> None: super().__init__(hyperparams=hyperparams, random_seed=random_seed, docker_containers=docker_containers) self._clf = LSTMOutlierDetector(contamination=hyperparams['contamination'], train_contamination=hyperparams['train_contamination'], min_attack_time=hyperparams['min_attack_time'], danger_coefficient_weight=hyperparams['danger_coefficient_weight'], loss=hyperparams['loss_func'], optimizer=hyperparams['optimizer'], epochs=hyperparams['epochs'], batch_size=hyperparams['batch_size'], dropout_rate=hyperparams['dropout_rate'], feature_dim=hyperparams['feature_dim'], hidden_dim=hyperparams['hidden_dim'], n_hidden_layer=hyperparams['n_hidden_layer'], activation=hyperparams['activation'], diff_group_method=hyperparams['diff_group_method'], ) return def set_training_data(self, *, inputs: Inputs) -> None: """ Set training data for outlier detection. Args: inputs: Container DataFrame Returns: None """ super().set_training_data(inputs=inputs) def fit(self, *, timeout: float = None, iterations: int = None) -> CallResult[None]: """ Fit model with training data. Args: *: Container DataFrame. Time series data up to fit. Returns: None """ return super().fit() def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> CallResult[Outputs]: """ Process the testing data. Args: inputs: Container DataFrame. Time series data up to outlier detection. Returns: Container DataFrame 1 marks Outliers, 0 marks normal. """ return super().produce(inputs=inputs, timeout=timeout, iterations=iterations) def get_params(self) -> Params: """ Return parameters. Args: None Returns: class Params """ return super().get_params() def set_params(self, *, params: Params) -> None: """ Set parameters for outlier detection. Args: params: class Params Returns: None """ super().set_params(params=params)