import os import sklearn import numpy import typing import time from scipy import sparse from numpy import ndarray from collections import OrderedDict from typing import Any, Callable, List, Dict, Union, Optional, Sequence, Tuple import numpy as np import pandas as pd import logging, uuid from scipy import sparse from numpy import ndarray from collections import OrderedDict from common_primitives import dataframe_utils, utils from d3m import utils from d3m import container from d3m.base import utils as base_utils from d3m.exceptions import PrimitiveNotFittedError from d3m.container import DataFrame as d3m_dataframe from d3m.container.numpy import ndarray as d3m_ndarray from d3m.primitive_interfaces import base, transformer from d3m.metadata import base as metadata_base, hyperparams from d3m.metadata import hyperparams, params, base as metadata_base from d3m.primitive_interfaces.base import CallResult, DockerContainer from statsmodels.tsa.stattools import acf # import os.path __all__ = ('ColumnFilter',) Inputs = container.DataFrame Outputs = container.DataFrame class Hyperparams(hyperparams.Hyperparams): # Keep previous dataframe_resource = hyperparams.Hyperparameter[typing.Union[str, None]]( default=None, semantic_types=['https://metadata.datadrivendiscovery.org/types/ControlParameter'], description="Resource ID of a DataFrame to extract if there are multiple tabular resources inside a Dataset and none is a dataset entry point.", ) use_columns = hyperparams.Set( elements=hyperparams.Hyperparameter[int](-1), default=(2,), semantic_types=['https://metadata.datadrivendiscovery.org/types/ControlParameter'], description="A set of column indices to force primitive to operate on. If any specified column cannot be parsed, it is skipped.", ) exclude_columns = hyperparams.Set( elements=hyperparams.Hyperparameter[int](-1), default=(0,1,3,), semantic_types=['https://metadata.datadrivendiscovery.org/types/ControlParameter'], description="A set of column indices to not operate on. Applicable only if \"use_columns\" is not provided.", ) return_result = hyperparams.Enumeration( values=['append', 'replace', 'new'], default='append', semantic_types=['https://metadata.datadrivendiscovery.org/types/ControlParameter'], description="Should parsed columns be appended, should they replace original columns, or should only parsed columns be returned? This hyperparam is ignored if use_semantic_types is set to false.", ) use_semantic_types = hyperparams.UniformBool( default=False, semantic_types=['https://metadata.datadrivendiscovery.org/types/ControlParameter'], description="Controls whether semantic_types metadata will be used for filtering columns in input dataframe. Setting this to false makes the code ignore return_result and will produce only the output dataframe" ) add_index_columns = hyperparams.UniformBool( default=False, semantic_types=['https://metadata.datadrivendiscovery.org/types/ControlParameter'], description="Also include primary index columns if input data has them. Applicable only if \"return_result\" is set to \"new\".", ) error_on_no_input = hyperparams.UniformBool( default=True, semantic_types=['https://metadata.datadrivendiscovery.org/types/ControlParameter'], description="Throw an exception if no input column is selected/provided. Defaults to true to behave like sklearn. To prevent pipelines from breaking set this to False.", ) return_semantic_type = hyperparams.Enumeration[str]( values=['https://metadata.datadrivendiscovery.org/types/Attribute', 'https://metadata.datadrivendiscovery.org/types/ConstructedAttribute'], default='https://metadata.datadrivendiscovery.org/types/Attribute', description='Decides what semantic type to attach to generated attributes', semantic_types=['https://metadata.datadrivendiscovery.org/types/ControlParameter'] ) class ColumnFilter(transformer.TransformerPrimitiveBase[Inputs, Outputs, Hyperparams]): """ A primitive that filters out columns of wrong shape in DataFrame (specifically columns generated by some features analysis) """ metadata = metadata_base.PrimitiveMetadata({ '__author__': "DATA Lab @Texas A&M University", 'name': "Column Filter", 'python_path': 'd3m.primitives.tods.data_processing.column_filter', 'source': {'name': "DATALAB @Taxes A&M University", 'contact': 'mailto:khlai037@tamu.edu', 'uris': ['https://gitlab.com/lhenry15/tods/-/blob/Yile/tods/tods/data_processing/column_filter.py']}, 'algorithm_types': [metadata_base.PrimitiveAlgorithmType.COLUMN_FILTER,], 'primitive_family': metadata_base.PrimitiveFamily.DATA_PREPROCESSING, 'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'ColumnFilterPrimitive')), 'version': '0.0.1', }) def __init__(self, *, hyperparams: Hyperparams) -> None: super().__init__(hyperparams=hyperparams) #self._clf = column_filter() def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: """ Process the testing data. Args: inputs: Container DataFrame. Returns: Container DataFrame after AutoCorrelation. """ outputs=inputs index_to_keep = np.array([]) for i in range(len(inputs.columns)): column_to_check = outputs.iloc[:,i] cell_to_check = column_to_check.iloc[-1:] if not np.isnan(cell_to_check.values[0]): index_to_keep=np.append(index_to_keep,i) outputs=outputs.iloc[:,index_to_keep] self._update_metadata(outputs) return CallResult(outputs) def _update_metadata(self, outputs): outputs.metadata = outputs.metadata.generate(outputs)