R1 reasoning tokens from hosted R1 model were not parsed correctly for the openai client

Resolves #5941

---------

Co-authored-by: Eric Zhu <ekzhu@users.noreply.github.com>

1. Add host network support in Docker and remove unused requirements
from argument check.
2. Use Pandas to simplify summary statistic calculations. 
3. Add running time to summary statistics

```
Using tabulation method defined in '/home/ekzhu/autogen/python/packages/agbench/benchmarks/HumanEval/Scripts/custom_tabulate.py'

    Task Id       Trial 0 Success      Trial 0 Time
--  ------------  -----------------  --------------
 0  HumanEval_0   True                            3
 1  HumanEval_1   False                          15
 2  HumanEval_2   True                            2
 3  HumanEval_3   True                           11
 4  HumanEval_4   True                            4
 5  HumanEval_5   True                            2
 6  HumanEval_6   False                          18
 7  HumanEval_7   True                            2
 8  HumanEval_8   True                            2
 9  HumanEval_9   True                           12
10  HumanEval_10  False                          11
11  HumanEval_11  True                            2
12  HumanEval_12  True                            3
13  HumanEval_13  True                            1
14  HumanEval_14  True                            4
15  HumanEval_15  True                            1
16  HumanEval_16  True                            2
17  HumanEval_17  False                          76
18  HumanEval_18  True                            4
19  HumanEval_19  True                            3
20  HumanEval_20  True                            5
21  HumanEval_21  True                            3
22  HumanEval_22  True                            1
23  HumanEval_23  True                            2
24  HumanEval_24                                nan

Summary Statistics

           Successes    Failures    Missing    Total    Average Success Rate    Average Time    Total Time
-------  -----------  ----------  ---------  -------  ----------------------  --------------  ------------
Trial 0           20           4          1       25                     0.8           7.875           189

CAUTION: 'autogenbench tabulate' is in early preview and is not thoroughly tested.
Please do not cite values from these calculations in academic work without first inspecting and verifying the results in the run logs yourself.

```

Now the default tabulate output looks like this

---------

Co-authored-by: Ryan Sweet <rysweet@microsoft.com>

Address questions related to logging of model client calls and reduce
redundant docs.

<!-- Thank you for your contribution! Please review
https://microsoft.github.io/autogen/docs/Contribute before opening a
pull request. -->

<!-- Please add a reviewer to the assignee section when you create a PR.
If you don't have the access to it, we will shortly find a reviewer and
assign them to your PR. -->

## Why are these changes needed?


https://github.com/user-attachments/assets/b649053b-c377-40c7-aa51-ee64af766fc2

<img width="100%" alt="image"
src="https://github.com/user-attachments/assets/03ba1df5-c9a2-4734-b6a2-0eb97ec0b0e0"
/>


## Authentication

This PR implements an experimental authentication feature to enable
personalized experiences (multiple users). Currently, only GitHub
authentication is supported. You can extend the base authentication
class to add support for other authentication methods.

By default authenticatio is disabled and only enabled when you pass in
the `--auth-config` argument when running the application.

### Enable GitHub Authentication

To enable GitHub authentication, create a `auth.yaml` file in your app
directory:

```yaml
type: github
jwt_secret: "your-secret-key"
token_expiry_minutes: 60
github:
  client_id: "your-github-client-id"
  client_secret: "your-github-client-secret"
  callback_url: "http://localhost:8081/api/auth/callback"
  scopes: ["user:email"]
```

Please see the documentation on [GitHub
OAuth](https://docs.github.com/en/apps/oauth-apps/building-oauth-apps/authenticating-to-the-rest-api-with-an-oauth-app)
for more details on obtaining the `client_id` and `client_secret`.

To pass in this configuration you can use the `--auth-config` argument
when running the application:

```bash
autogenstudio ui --auth-config /path/to/auth.yaml
```

Or set the environment variable:

```bash
export AUTOGENSTUDIO_AUTH_CONFIG="/path/to/auth.yaml"
```

```{note}
- Authentication is currently experimental and may change in future releases
- User data is stored in your configured database
- When enabled, all API endpoints require authentication except for the authentication endpoints
- WebSocket connections require the token to be passed as a query parameter (`?token=your-jwt-token`)

```

## Related issue number

<!-- For example: "Closes #1234" -->
Closes #4350  

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

---------

Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>

use the latest version of llama-cpp-python to ensure `uv sync
--all-extras` don't fail on windows.

reference:
https://github.com/microsoft/autogen/pull/5942#issuecomment-2724478534

`poe check` fails on main on Windows due to a combination line ending
mismatches, Unix-specific commands, and Windows-specific `asyncio`
behavior. This PR attempts to fix this (so that `poe check` on a
freshly-pulled `main` passes on Windows 11.)

Currently we have SecretStr type for model clients to promote security
best practices.

- when we dump_component, keys are serialized  as SecreteStr ..
- when we load_component ... SecreteStr type is passed to the client in
the api_key field. This i causes the type problems as the clients expect
a string type.

This PR updates the from_config method for model clients to ensure we
get the value from SecretStr.

Closes #5944

<!-- Thank you for your contribution! Please review
https://microsoft.github.io/autogen/docs/Contribute before opening a
pull request. -->

<!-- Please add a reviewer to the assignee section when you create a PR.
If you don't have the access to it, we will shortly find a reviewer and
assign them to your PR. -->

## Why are these changes needed?
<img width="1151" alt="image"
src="https://github.com/user-attachments/assets/98bc91ee-749c-4831-b36f-10322979883b"
/>
 
- Update migration guide to cover teachability/rag agents (mention how
similar functionality can be accomplished with AssistantAgent + Memory)
- Update memory docs to explicitly add a text chunking example and a rag
agent

<!-- Please give a short summary of the change and the problem this
solves. -->

## Related issue number

<!-- For example: "Closes #1234" -->

Closes #5772 
Closes #4742

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

To prevent accidental export of API keys

Fixes issues like the following trace:

```
packages/autogen_ext/agents/file_surfer/_markdown_file_browser.py", line 39, in __init__
    self.set_path(self._base_path)
  File "/home/hmozannar/webby/.venv/lib/python3.12/site-packages/autogen_ext/agents/file_surfer/_markdown_file_browser.py", line 67, in set_path
    self._open_path(path)
  File "/home/hmozannar/webby/.venv/lib/python3.12/site-packages/autogen_ext/agents/file_surfer/_markdown_file_browser.py", line 210, in _open_path
    io.StringIO(self._fetch_local_dir(path)), file_extension=".txt"
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/hmozannar/webby/.venv/lib/python3.12/site-packages/autogen_ext/agents/file_surfer/_markdown_file_browser.py", line 248, in _fetch_local_dir
    mtime = datetime.datetime.fromtimestamp(os.path.getmtime(full_path)).strftime("%Y-%m-%d %H:%M")
                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen genericpath>", line 67, in getmtime
PermissionError: [Errno 13] Permission denied: '/home/hmozannar/webby/autogen-studio/frontend/readme.txt'
```

<!-- Thank you for your contribution! Please review
https://microsoft.github.io/autogen/docs/Contribute before opening a
pull request. -->

<!-- Please add a reviewer to the assignee section when you create a PR.
If you don't have the access to it, we will shortly find a reviewer and
assign them to your PR. -->

## Why are these changes needed?

This reverts the base image in AutoGen Studio Dockerfile to `FROM
python:3.10-slim`. This fixes the Docker image build failure due to
conflicting UID with Dev Container's `vscode` user.

## Related issue number

Fixes #5929

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

Bumps
[@babel/helpers](https://github.com/babel/babel/tree/HEAD/packages/babel-helpers)
from 7.26.9 to 7.26.10.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/babel/babel/releases"><code>@​babel/helpers</code>'s
releases</a>.</em></p>
<blockquote>
<h2>v7.26.10 (2025-03-11)</h2>
<p>Thanks <a
href="https://github.com/jordan-choi"><code>@​jordan-choi</code></a> and
<a
href="https://github.com/mmmsssttt404"><code>@​mmmsssttt404</code></a>
for your first PRs!</p>
<p>This release includes a fix for <a
href="https://github.com/babel/babel/security/advisories/GHSA-968p-4wvh-cqc8">https://github.com/babel/babel/security/advisories/GHSA-968p-4wvh-cqc8</a>,
a security vulnerability which affects the <code>.replace</code> method
of transpiled regular expressions that use named capturing groups.</p>
<h4>👓 Spec Compliance</h4>
<ul>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17159">#17159</a>
Disallow decorator in array pattern (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
</ul>
<h4>🐛 Bug Fix</h4>
<ul>
<li><code>babel-parser</code>, <code>babel-template</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17164">#17164</a>
Fix: always initialize ExportDeclaration attributes (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-core</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17142">#17142</a>
fix: &quot;Map maximum size exceeded&quot; in deepClone (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-parser</code>,
<code>babel-plugin-transform-typescript</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17154">#17154</a>
Update typescript parser tests (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-traverse</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17151">#17151</a>
fix: Should not evaluate vars in child scope (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-generator</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17153">#17153</a>
fix: Correctly generate <code>abstract override</code> (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17107">#17107</a> Fix
source type detection when parsing TypeScript (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-helpers</code>, <code>babel-runtime</code>,
<code>babel-runtime-corejs2</code>, <code>babel-runtime-corejs3</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17173">#17173</a> Fix
processing of replacement pattern with named capture groups (<a
href="https://github.com/%5Bmmmsssttt404%5D(https://github.com/mmmsssttt404)"><code>@​mmmsssttt404</code></a>)</li>
</ul>
</li>
</ul>
<h4>💅 Polish</h4>
<ul>
<li><code>babel-standalone</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17158">#17158</a>
Avoid warnings when re-bundling <code>@​babel/standalone</code> with
webpack (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
</ul>
<h4>🏠 Internal</h4>
<ul>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17160">#17160</a>
Left-value parsing cleanup (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
</ul>
<h4>Committers: 6</h4>
<ul>
<li>Babel Bot (<a
href="https://github.com/babel-bot"><code>@​babel-bot</code></a>)</li>
<li>Huáng Jùnliàng (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
<li>Nicolò Ribaudo (<a
href="https://github.com/nicolo-ribaudo"><code>@​nicolo-ribaudo</code></a>)</li>
<li>Yunyoung Jordan Choi (<a
href="https://github.com/jordan-choi"><code>@​jordan-choi</code></a>)</li>
<li><a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a></li>
<li><a
href="https://github.com/mmmsssttt404"><code>@​mmmsssttt404</code></a></li>
</ul>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/babel/babel/blob/main/CHANGELOG.md"><code>@​babel/helpers</code>'s
changelog</a>.</em></p>
<blockquote>
<h2>v7.26.10 (2025-03-11)</h2>
<h4>👓 Spec Compliance</h4>
<ul>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17159">#17159</a>
Disallow decorator in array pattern (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
</ul>
<h4>🐛 Bug Fix</h4>
<ul>
<li><code>babel-parser</code>, <code>babel-template</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17164">#17164</a>
Fix: always initialize ExportDeclaration attributes (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-core</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17142">#17142</a>
fix: &quot;Map maximum size exceeded&quot; in deepClone (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-parser</code>,
<code>babel-plugin-transform-typescript</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17154">#17154</a>
Update typescript parser tests (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-traverse</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17151">#17151</a>
fix: Should not evaluate vars in child scope (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-generator</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17153">#17153</a>
fix: Correctly generate <code>abstract override</code> (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17107">#17107</a> Fix
source type detection when parsing TypeScript (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-helpers</code>, <code>babel-runtime</code>,
<code>babel-runtime-corejs2</code>, <code>babel-runtime-corejs3</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17173">#17173</a> Fix
processing of replacement pattern with named capture groups (<a
href="https://github.com/%5Bmmmsssttt404%5D(https://github.com/mmmsssttt404)"><code>@​mmmsssttt404</code></a>)</li>
</ul>
</li>
</ul>
<h4>💅 Polish</h4>
<ul>
<li><code>babel-standalone</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17158">#17158</a>
Avoid warnings when re-bundling <code>@​babel/standalone</code> with
webpack (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
</ul>
<h4>🏠 Internal</h4>
<ul>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17160">#17160</a>
Left-value parsing cleanup (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="e1ce99df42"><code>e1ce99d</code></a>
v7.26.10</li>
<li><a
href="d5952e80c0"><code>d5952e8</code></a>
Fix processing of replacement pattern with named capture groups (<a
href="https://github.com/babel/babel/tree/HEAD/packages/babel-helpers/issues/17173">#17173</a>)</li>
<li>See full diff in <a
href="https://github.com/babel/babel/commits/v7.26.10/packages/babel-helpers">compare
view</a></li>
</ul>
</details>
<br />


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Bumps
[@babel/runtime](https://github.com/babel/babel/tree/HEAD/packages/babel-runtime)
from 7.26.9 to 7.26.10.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/babel/babel/releases"><code>@​babel/runtime</code>'s
releases</a>.</em></p>
<blockquote>
<h2>v7.26.10 (2025-03-11)</h2>
<p>Thanks <a
href="https://github.com/jordan-choi"><code>@​jordan-choi</code></a> and
<a
href="https://github.com/mmmsssttt404"><code>@​mmmsssttt404</code></a>
for your first PRs!</p>
<p>This release includes a fix for <a
href="https://github.com/babel/babel/security/advisories/GHSA-968p-4wvh-cqc8">https://github.com/babel/babel/security/advisories/GHSA-968p-4wvh-cqc8</a>,
a security vulnerability which affects the <code>.replace</code> method
of transpiled regular expressions that use named capturing groups.</p>
<h4>👓 Spec Compliance</h4>
<ul>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17159">#17159</a>
Disallow decorator in array pattern (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
</ul>
<h4>🐛 Bug Fix</h4>
<ul>
<li><code>babel-parser</code>, <code>babel-template</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17164">#17164</a>
Fix: always initialize ExportDeclaration attributes (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-core</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17142">#17142</a>
fix: &quot;Map maximum size exceeded&quot; in deepClone (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-parser</code>,
<code>babel-plugin-transform-typescript</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17154">#17154</a>
Update typescript parser tests (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-traverse</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17151">#17151</a>
fix: Should not evaluate vars in child scope (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-generator</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17153">#17153</a>
fix: Correctly generate <code>abstract override</code> (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17107">#17107</a> Fix
source type detection when parsing TypeScript (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-helpers</code>, <code>babel-runtime</code>,
<code>babel-runtime-corejs2</code>, <code>babel-runtime-corejs3</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17173">#17173</a> Fix
processing of replacement pattern with named capture groups (<a
href="https://github.com/%5Bmmmsssttt404%5D(https://github.com/mmmsssttt404)"><code>@​mmmsssttt404</code></a>)</li>
</ul>
</li>
</ul>
<h4>💅 Polish</h4>
<ul>
<li><code>babel-standalone</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17158">#17158</a>
Avoid warnings when re-bundling <code>@​babel/standalone</code> with
webpack (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
</ul>
<h4>🏠 Internal</h4>
<ul>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17160">#17160</a>
Left-value parsing cleanup (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
</ul>
<h4>Committers: 6</h4>
<ul>
<li>Babel Bot (<a
href="https://github.com/babel-bot"><code>@​babel-bot</code></a>)</li>
<li>Huáng Jùnliàng (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
<li>Nicolò Ribaudo (<a
href="https://github.com/nicolo-ribaudo"><code>@​nicolo-ribaudo</code></a>)</li>
<li>Yunyoung Jordan Choi (<a
href="https://github.com/jordan-choi"><code>@​jordan-choi</code></a>)</li>
<li><a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a></li>
<li><a
href="https://github.com/mmmsssttt404"><code>@​mmmsssttt404</code></a></li>
</ul>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/babel/babel/blob/main/CHANGELOG.md"><code>@​babel/runtime</code>'s
changelog</a>.</em></p>
<blockquote>
<h2>v7.26.10 (2025-03-11)</h2>
<h4>👓 Spec Compliance</h4>
<ul>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17159">#17159</a>
Disallow decorator in array pattern (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
</ul>
<h4>🐛 Bug Fix</h4>
<ul>
<li><code>babel-parser</code>, <code>babel-template</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17164">#17164</a>
Fix: always initialize ExportDeclaration attributes (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-core</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17142">#17142</a>
fix: &quot;Map maximum size exceeded&quot; in deepClone (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-parser</code>,
<code>babel-plugin-transform-typescript</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17154">#17154</a>
Update typescript parser tests (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-traverse</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17151">#17151</a>
fix: Should not evaluate vars in child scope (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-generator</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17153">#17153</a>
fix: Correctly generate <code>abstract override</code> (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17107">#17107</a> Fix
source type detection when parsing TypeScript (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
<li><code>babel-helpers</code>, <code>babel-runtime</code>,
<code>babel-runtime-corejs2</code>, <code>babel-runtime-corejs3</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17173">#17173</a> Fix
processing of replacement pattern with named capture groups (<a
href="https://github.com/%5Bmmmsssttt404%5D(https://github.com/mmmsssttt404)"><code>@​mmmsssttt404</code></a>)</li>
</ul>
</li>
</ul>
<h4>💅 Polish</h4>
<ul>
<li><code>babel-standalone</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17158">#17158</a>
Avoid warnings when re-bundling <code>@​babel/standalone</code> with
webpack (<a
href="https://github.com/liuxingbaoyu"><code>@​liuxingbaoyu</code></a>)</li>
</ul>
</li>
</ul>
<h4>🏠 Internal</h4>
<ul>
<li><code>babel-parser</code>
<ul>
<li><a
href="https://redirect.github.com/babel/babel/pull/17160">#17160</a>
Left-value parsing cleanup (<a
href="https://github.com/JLHwung"><code>@​JLHwung</code></a>)</li>
</ul>
</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="e1ce99df42"><code>e1ce99d</code></a>
v7.26.10</li>
<li><a
href="d5952e80c0"><code>d5952e8</code></a>
Fix processing of replacement pattern with named capture groups (<a
href="https://github.com/babel/babel/tree/HEAD/packages/babel-runtime/issues/17173">#17173</a>)</li>
<li>See full diff in <a
href="https://github.com/babel/babel/commits/v7.26.10/packages/babel-runtime">compare
view</a></li>
</ul>
</details>
<br />


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Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Victor Dibia <victordibia@microsoft.com>

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![image](https://github.com/user-attachments/assets/73735a47-f3a6-44f6-8e9d-3a5632c8a80f)


## Why are these changes needed?

The [agentchat teams
docs](https://microsoft.github.io/autogen/dev/user-guide/agentchat-user-guide/tutorial/teams.html)
page did not list out the teams currently supported. This is confusing
for readers/uisers as they have to search around to discover that
selector groupchat, swarm and magentic one are available.

This PR adds a list of supported teams to the top of the teams page and
links to the relevant tutorials.

<!-- Please give a short summary of the change and the problem this
solves. -->

## Related issue number

<!-- For example: "Closes #1234" -->

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

Fixed a typo, chroma_user_memory instead of user_memory

## Why are these changes needed?

There's a confusing typo in the documentation.

## Related issue number

None

## Checks

- [x ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ x] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [x ] I've made sure all auto checks have passed.

Co-authored-by: Victor Dibia <victordibia@microsoft.com>

Resolves #5919

Use of `SKChatCompletionAdapter` reliably fails with "'MockValSer'
object cannot be converted to 'SchemaSerializer'"; can repro with this
example:
https://microsoft.github.io/autogen/stable/user-guide/core-user-guide/components/model-clients.html#semantic-kernel-adapter

This appears to be related to
https://github.com/pydantic/pydantic/issues/7713 - commit uses
workaround from
https://github.com/pydantic/pydantic/issues/7713#issuecomment-2604574418

## Why are these changes needed?

This unblocks use of the Semantic Kernel integration by addressing the
above-referenced error, enabling the integration to perform as expected.

## Related issue number

N/A, see https://github.com/pydantic/pydantic/issues/7713 for context,
though.

## Checks

- [X] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
 - None needed, internal only change.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- None added; this works on my machine, but I'm not clear on the root
cause of the issue and have no strong opinion on whether this is the
ideal way to fix it long term - simply leaning towards PR`ing a tenative
fix instead of raising an issue.
- [ ] I've made sure all auto checks have passed.
 - I am not familiar with these, but assume they will be run during CI.

---------

Co-authored-by: Leonardo Pinheiro <leosantospinheiro@gmail.com>
Co-authored-by: Eric Zhu <ekzhu@users.noreply.github.com>

Update FileSurfer and WebSurfer to use the latest MarkItDown package.

Resolves #5910

Co-authored-by: peterychang <49209570+peterychang@users.noreply.github.com>

Reverts https://github.com/microsoft/autogen/pull/5857 due to weird
interaction with non-clickable cards

1. Add `on_pause` and `on_resume` API to `ChatAgent` to support pausing
behavior when running `on_message` concurrently.
2. Add `GroupChatPause` and `GroupChatResume` RPC events and handle them
in `ChatAgentContainer`.
3. Add `pause` and `resume` API to `BaseGroupChat` to allow for this
behavior accessible from the public API.
4. Improve `SequentialRoutedAgent` class to customize which message
types are sequentially handled, making it possible to have concurrent
handling for some messages (e.g., `GroupChatPause`).
5. Added unit tests. 

See `test_group_chat_pause_resume.py` for how to use this feature. 

What is the difference between pause/resume vs. termination and restart?
- Pause and resume issue direct RPC calls to the participanting agents
of a team while they are running, allowing putting the on-going
generation or actions on hold. This is useful when an agent's turn takes
a long time and multiple steps to complete, and user/application wants
to re-evaluate whether it is worth continue the step or cancel. This
also allows user/application to pause individual agents and resuming
them independently from the team API.
- Termination and restart requires the whole team to comes to a
full-stop, and termination conditions are checked in between agents'
turns. So termination can only happen when no agent is working on its
turn. It is possible that a termination condition has reached well
before the team is terminated, if the agent is taking a long time to
generate a response.

Resolves: #5881

These changes allow for 2 important use-cases:
1. Add a span for tool calls which will enable tracing of all tool calls
in agent_chat
2. Allow runtimes to pick up global `tracer_providers` if they are
available. This is very helpful because it allows for nested teams/agent
to all use the same tracer.
---------

Co-authored-by: Eric Zhu <ekzhu@users.noreply.github.com>

These changes are needed because there is currently no way to get
logging information about Streaming LLM requests/responses.

I decided to put the StreamStart event AFTER the first chunk so there
aren't false positives about connections/auth.

Closes #5730
---------

Co-authored-by: Eric Zhu <ekzhu@users.noreply.github.com>

<!-- Thank you for your contribution! Please review
https://microsoft.github.io/autogen/docs/Contribute before opening a
pull request. -->

<!-- Please add a reviewer to the assignee section when you create a PR.
If you don't have the access to it, we will shortly find a reviewer and
assign them to your PR. -->

## Why are these changes needed?

Fix termination UI in AGS, ensure it can be edited correctly

<img width="1269" alt="image"
src="https://github.com/user-attachments/assets/eaa7a92f-a1ea-4ab4-a679-2894ac441311"
/>
<img width="1273" alt="image"
src="https://github.com/user-attachments/assets/6db81068-932f-4d4e-9512-279770c02bf2"
/>
<img width="1270" alt="image"
src="https://github.com/user-attachments/assets/5ca9df7d-b968-46c9-9d62-becd78809273"
/>


<!-- Please give a short summary of the change and the problem this
solves. -->

## Related issue number

<!-- For example: "Closes #1234" -->
Closes #5872
## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

This pull request introduces the integration of the `llama-cpp` library
into the `autogen-ext` package, with significant changes to the project
dependencies and the implementation of a new chat completion client. The
most important changes include updating the project dependencies, adding
a new module for the `LlamaCppChatCompletionClient`, and implementing
the client with various functionalities.

### Project Dependencies:

*
[`python/packages/autogen-ext/pyproject.toml`](diffhunk://#diff-095119d4420ff09059557bd25681211d1772c2be0fbe0ff2d551a3726eff1b4bR34-R38):
Added `llama-cpp-python` as a new dependency under the `llama-cpp`
section.

### New Module:

*
[`python/packages/autogen-ext/src/autogen_ext/models/llama_cpp/__init__.py`](diffhunk://#diff-42ae3ba17d51ca917634c4ea3c5969cf930297c288a783f8d9c126f2accef71dR1-R8):
Introduced the `LlamaCppChatCompletionClient` class and handled import
errors with a descriptive message for missing dependencies.

### Implementation of `LlamaCppChatCompletionClient`:

*
`python/packages/autogen-ext/src/autogen_ext/models/llama_cpp/_llama_cpp_completion_client.py`:
- Added the `LlamaCppChatCompletionClient` class with methods to
initialize the client, create chat completions, detect and execute
tools, and handle streaming responses.
- Included detailed logging for debugging purposes and implemented
methods to count tokens, track usage, and provide model information.…d
chat capabilities

<!-- Thank you for your contribution! Please review
https://microsoft.github.io/autogen/docs/Contribute before opening a
pull request. -->

<!-- Please add a reviewer to the assignee section when you create a PR.
If you don't have the access to it, we will shortly find a reviewer and
assign them to your PR. -->

## Why are these changes needed?

<!-- Please give a short summary of the change and the problem this
solves. -->

## Related issue number

<!-- For example: "Closes #1234" -->

## Checks

- [X ] I've included any doc changes needed for
https://microsoft.github.io/autogen/. See
https://microsoft.github.io/autogen/docs/Contribute#documentation to
build and test documentation locally.
- [X ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ X] I've made sure all auto checks have passed.

---------

Co-authored-by: aribornstein <x@x.com>
Co-authored-by: Eric Zhu <ekzhu@users.noreply.github.com>
Co-authored-by: Ryan Sweet <rysweet@microsoft.com>

To support powershell on the local code executor.
Closes #5518

This pull request introduces a new feature to the `FileSurfer` agent and
`MarkdownFileBrowser` by adding support for specifying a base path for
file browsing.

*
`python/packages/autogen-ext/src/autogen_ext/agents/file_surfer/_file_surfer.py`:
* Added `base_path` parameter to `FileSurfer` class and its
initialization method, with a default value of the current working
directory (`os.getcwd()`).
[[1]](diffhunk://#diff-084847b5e64c659c9aff0bd2d05bbcd0fff2c819a4b91bbe65fa0566054c0972R58)
[[2]](diffhunk://#diff-084847b5e64c659c9aff0bd2d05bbcd0fff2c819a4b91bbe65fa0566054c0972R80-R85)
* Updated `MarkdownFileBrowser` initialization within `FileSurfer` to
use the `base_path` parameter.

*
`python/packages/autogen-ext/src/autogen_ext/agents/file_surfer/_markdown_file_browser.py`:
* Added `base_path` parameter to `MarkdownFileBrowser` class and its
initialization method, with a default value of the current working
directory (`os.getcwd()`).
* Updated `MarkdownFileBrowser` to use the `base_path` for setting the
initial path and returning the current page path.

Modify `BaseGroupChat.save_state` to not require the team to be stopped
first. The `save_state` method is read-only. While it may retrieve an
inconsistent state when the team is running, we made a notice to it's
API doc.

Resolves: #5880

Resolves #5697

Bumps [axios](https://github.com/axios/axios) from 1.7.9 to 1.8.2.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/axios/axios/releases">axios's
releases</a>.</em></p>
<blockquote>
<h2>Release v1.8.2</h2>
<h2>Release notes:</h2>
<h3>Bug Fixes</h3>
<ul>
<li><strong>http-adapter:</strong> add allowAbsoluteUrls to path
building (<a
href="https://redirect.github.com/axios/axios/issues/6810">#6810</a>)
(<a
href="fb8eec214c">fb8eec2</a>)</li>
</ul>
<h3>Contributors to this release</h3>
<ul>
<li><!-- raw HTML omitted --> <a href="https://github.com/lexcorp16"
title="+1/-1 ([#6810](https://github.com/axios/axios/issues/6810)
)">Fasoro-Joseph Alexander</a></li>
</ul>
<h2>Release v1.8.1</h2>
<h2>Release notes:</h2>
<h3>Bug Fixes</h3>
<ul>
<li><strong>utils:</strong> move <code>generateString</code> to platform
utils to avoid importing crypto module into client builds; (<a
href="https://redirect.github.com/axios/axios/issues/6789">#6789</a>)
(<a
href="36a5a620be">36a5a62</a>)</li>
</ul>
<h3>Contributors to this release</h3>
<ul>
<li><!-- raw HTML omitted --> <a
href="https://github.com/DigitalBrainJS" title="+51/-47
([#6789](https://github.com/axios/axios/issues/6789) )">Dmitriy
Mozgovoy</a></li>
</ul>
<h2>Release v1.8.0</h2>
<h2>Release notes:</h2>
<h3>Bug Fixes</h3>
<ul>
<li><strong>examples:</strong> application crashed when navigating
examples in browser (<a
href="https://redirect.github.com/axios/axios/issues/5938">#5938</a>)
(<a
href="1260ded634">1260ded</a>)</li>
<li>missing word in SUPPORT_QUESTION.yml (<a
href="https://redirect.github.com/axios/axios/issues/6757">#6757</a>)
(<a
href="1f890b13f2">1f890b1</a>)</li>
<li><strong>utils:</strong> replace getRandomValues with crypto module
(<a
href="https://redirect.github.com/axios/axios/issues/6788">#6788</a>)
(<a
href="23a25af068">23a25af</a>)</li>
</ul>
<h3>Features</h3>
<ul>
<li>Add config for ignoring absolute URLs (<a
href="https://redirect.github.com/axios/axios/issues/5902">#5902</a>)
(<a
href="https://redirect.github.com/axios/axios/issues/6192">#6192</a>)
(<a
href="32c7bcc0f2">32c7bcc</a>)</li>
</ul>
<h3>Reverts</h3>
<ul>
<li>Revert &quot;chore: expose fromDataToStream to be consumable (<a
href="https://redirect.github.com/axios/axios/issues/6731">#6731</a>)&quot;
(<a
href="https://redirect.github.com/axios/axios/issues/6732">#6732</a>)
(<a
href="1317261125">1317261</a>),
closes <a
href="https://redirect.github.com/axios/axios/issues/6731">#6731</a> <a
href="https://redirect.github.com/axios/axios/issues/6732">#6732</a></li>
</ul>
<h3>BREAKING CHANGES</h3>
<ul>
<li>
<p>code relying on the above will now combine the URLs instead of prefer
request URL</p>
</li>
<li>
<p>feat: add config option for allowing absolute URLs</p>
</li>
<li>
<p>fix: add default value for allowAbsoluteUrls in buildFullPath</p>
</li>
<li>
<p>fix: typo in flow control when setting allowAbsoluteUrls</p>
</li>
</ul>
<h3>Contributors to this release</h3>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/axios/axios/blob/v1.x/CHANGELOG.md">axios's
changelog</a>.</em></p>
<blockquote>
<h2><a
href="https://github.com/axios/axios/compare/v1.8.1...v1.8.2">1.8.2</a>
(2025-03-07)</h2>
<h3>Bug Fixes</h3>
<ul>
<li><strong>http-adapter:</strong> add allowAbsoluteUrls to path
building (<a
href="https://redirect.github.com/axios/axios/issues/6810">#6810</a>)
(<a
href="fb8eec214c">fb8eec2</a>)</li>
</ul>
<h3>Contributors to this release</h3>
<ul>
<li><!-- raw HTML omitted --> <a href="https://github.com/lexcorp16"
title="+1/-1 ([#6810](https://github.com/axios/axios/issues/6810)
)">Fasoro-Joseph Alexander</a></li>
</ul>
<h2><a
href="https://github.com/axios/axios/compare/v1.8.0...v1.8.1">1.8.1</a>
(2025-02-26)</h2>
<h3>Bug Fixes</h3>
<ul>
<li><strong>utils:</strong> move <code>generateString</code> to platform
utils to avoid importing crypto module into client builds; (<a
href="https://redirect.github.com/axios/axios/issues/6789">#6789</a>)
(<a
href="36a5a620be">36a5a62</a>)</li>
</ul>
<h3>Contributors to this release</h3>
<ul>
<li><!-- raw HTML omitted --> <a
href="https://github.com/DigitalBrainJS" title="+51/-47
([#6789](https://github.com/axios/axios/issues/6789) )">Dmitriy
Mozgovoy</a></li>
</ul>
<h1><a
href="https://github.com/axios/axios/compare/v1.7.9...v1.8.0">1.8.0</a>
(2025-02-25)</h1>
<h3>Bug Fixes</h3>
<ul>
<li><strong>examples:</strong> application crashed when navigating
examples in browser (<a
href="https://redirect.github.com/axios/axios/issues/5938">#5938</a>)
(<a
href="1260ded634">1260ded</a>)</li>
<li>missing word in SUPPORT_QUESTION.yml (<a
href="https://redirect.github.com/axios/axios/issues/6757">#6757</a>)
(<a
href="1f890b13f2">1f890b1</a>)</li>
<li><strong>utils:</strong> replace getRandomValues with crypto module
(<a
href="https://redirect.github.com/axios/axios/issues/6788">#6788</a>)
(<a
href="23a25af068">23a25af</a>)</li>
</ul>
<h3>Features</h3>
<ul>
<li>Add config for ignoring absolute URLs (<a
href="https://redirect.github.com/axios/axios/issues/5902">#5902</a>)
(<a
href="https://redirect.github.com/axios/axios/issues/6192">#6192</a>)
(<a
href="32c7bcc0f2">32c7bcc</a>)</li>
</ul>
<h3>Reverts</h3>
<ul>
<li>Revert &quot;chore: expose fromDataToStream to be consumable (<a
href="https://redirect.github.com/axios/axios/issues/6731">#6731</a>)&quot;
(<a
href="https://redirect.github.com/axios/axios/issues/6732">#6732</a>)
(<a
href="1317261125">1317261</a>),
closes <a
href="https://redirect.github.com/axios/axios/issues/6731">#6731</a> <a
href="https://redirect.github.com/axios/axios/issues/6732">#6732</a></li>
</ul>
<h3>BREAKING CHANGES</h3>
<ul>
<li>
<p>code relying on the above will now combine the URLs instead of prefer
request URL</p>
</li>
<li>
<p>feat: add config option for allowing absolute URLs</p>
</li>
<li>
<p>fix: add default value for allowAbsoluteUrls in buildFullPath</p>
</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="a9f7689b0c"><code>a9f7689</code></a>
chore(release): v1.8.2 (<a
href="https://redirect.github.com/axios/axios/issues/6812">#6812</a>)</li>
<li><a
href="fb8eec214c"><code>fb8eec2</code></a>
fix(http-adapter): add allowAbsoluteUrls to path building (<a
href="https://redirect.github.com/axios/axios/issues/6810">#6810</a>)</li>
<li><a
href="9812045755"><code>9812045</code></a>
chore(sponsor): update sponsor block (<a
href="https://redirect.github.com/axios/axios/issues/6804">#6804</a>)</li>
<li><a
href="72acf75937"><code>72acf75</code></a>
chore(sponsor): update sponsor block (<a
href="https://redirect.github.com/axios/axios/issues/6794">#6794</a>)</li>
<li><a
href="2e64afdff5"><code>2e64afd</code></a>
chore(release): v1.8.1 (<a
href="https://redirect.github.com/axios/axios/issues/6800">#6800</a>)</li>
<li><a
href="36a5a620be"><code>36a5a62</code></a>
fix(utils): move <code>generateString</code> to platform utils to avoid
importing crypto...</li>
<li><a
href="cceb7b1e15"><code>cceb7b1</code></a>
chore(release): v1.8.0 (<a
href="https://redirect.github.com/axios/axios/issues/6795">#6795</a>)</li>
<li><a
href="23a25af068"><code>23a25af</code></a>
fix(utils): replace getRandomValues with crypto module (<a
href="https://redirect.github.com/axios/axios/issues/6788">#6788</a>)</li>
<li><a
href="32c7bcc0f2"><code>32c7bcc</code></a>
feat: Add config for ignoring absolute URLs (<a
href="https://redirect.github.com/axios/axios/issues/5902">#5902</a>)
(<a
href="https://redirect.github.com/axios/axios/issues/6192">#6192</a>)</li>
<li><a
href="4a3e26cf65"><code>4a3e26c</code></a>
chore(config): adjust rollup config to preserve license header to
minified Ja...</li>
<li>Additional commits viewable in <a
href="https://github.com/axios/axios/compare/v1.7.9...v1.8.2">compare
view</a></li>
</ul>
</details>
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Victor Dibia <victordibia@microsoft.com>

<!-- Thank you for your contribution! Please review
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pull request. -->

<!-- Please add a reviewer to the assignee section when you create a PR.
If you don't have the access to it, we will shortly find a reviewer and
assign them to your PR. -->

## Why are these changes needed?

Add anthropic docs

- Add api docs 
- Add sample code + usage in agent chat user guide

<!-- Please give a short summary of the change and the problem this
solves. -->

## Related issue number

<!-- For example: "Closes #1234" -->

Closes #5856 

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

Resolves #5745

Also made sure to log LLMCallEvent from all builtin model clients, and
added unit test for coverage.

---------

Co-authored-by: Ryan Sweet <rysweet@microsoft.com>
Co-authored-by: Victor Dibia <victordibia@microsoft.com>

Fixes #4821 by adding a `close()` method to all clients.

Additionally:
* The m1 CLI is updated to close the client before exiting.
* The playwrightcontroller is updated to suppress some other unrelated
chatty warnings (e.g,, produced by markitdown when encountering
conversions that require external utilities)

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pull request. -->

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assign them to your PR. -->

## Why are these changes needed?

Fixes accessibility issue (34)

## Related issue number

#5634 

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

Co-authored-by: Ryan Sweet <rysweet@microsoft.com>

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pull request. -->

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## Why are these changes needed?

Long module names get cut off in autodocs. Fixes (3). I would love to
break the words on dots and underscores, but it doesn't look like theres
a CSS option for that

before:

![image](https://github.com/user-attachments/assets/c2e425db-a197-4174-9af8-1f7a805df307)

after:

![image](https://github.com/user-attachments/assets/dcfc261a-61ca-4072-a28f-3b51e428ef7f)


## Related issue number

#5634 

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

Update the outdated ollama usage doc.

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pull request. -->

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## Why are these changes needed?

(Partially?) fixes accessibility issue (19). Question out to
accessibility team whether its enough.

Migrating to 16.0 for accessibility fixes. Not moving to 16.1 yet
because of a weird change to the 'Show Source' link's appearance

## Related issue number

#5630 

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

Co-authored-by: Ryan Sweet <rysweet@microsoft.com>

Fix issue here in this discussion -
https://github.com/microsoft/autogen/discussions/4208#discussioncomment-12394408

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## Why are these changes needed?

Fix bug in AGS UI where frontend crashes because the default team config
is null

- update /teams endpoint to always return a default team if none is
found for the user
- update UI to check for team before rendering 
- also update run_id type to be autoincrement int (similar to team id)
instead of uuid. This helps side step the migration failed errors
related to UUID type when using an sqlite backend

<!-- Please give a short summary of the change and the problem this
solves. -->

## Related issue number

<!-- For example: "Closes #1234" -->

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.

---------

Co-authored-by: Ryan Sweet <rysweet@microsoft.com>

Resolves #4075

1. Introduce custom runtime parameter for all AgentChat teams
(RoundRobinGroupChat, SelectorGroupChat, etc.). This is done by making
sure each team's topics are isolated from other teams, and decoupling
state from agent identities. Also, I removed the closure agent from the
BaseGroupChat and use the group chat manager agent to relay messages to
the output message queue.
2. Added unit tests to test scenarios with custom runtimes by using
pytest fixture
3. Refactored existing unit tests to use ReplayChatCompletionClient with
a few improvements to the client.
4. Fix a one-liner bug in AssistantAgent that caused deserialized agent
to have handoffs.

How to use it? 

```python
import asyncio
from autogen_core import SingleThreadedAgentRuntime
from autogen_agentchat.agents import AssistantAgent
from autogen_agentchat.teams import RoundRobinGroupChat
from autogen_agentchat.conditions import TextMentionTermination
from autogen_ext.models.replay import ReplayChatCompletionClient

async def main() -> None:
    # Create a runtime
    runtime = SingleThreadedAgentRuntime()
    runtime.start()

    # Create a model client.
    model_client = ReplayChatCompletionClient(
        ["1", "2", "3", "4", "5", "6", "7", "8", "9", "10"],
    )

    # Create agents
    agent1 = AssistantAgent("assistant1", model_client=model_client, system_message="You are a helpful assistant.")
    agent2 = AssistantAgent("assistant2", model_client=model_client, system_message="You are a helpful assistant.")

    # Create a termination condition
    termination_condition = TextMentionTermination("10", sources=["assistant1", "assistant2"])

    # Create a team
    team = RoundRobinGroupChat([agent1, agent2], runtime=runtime, termination_condition=termination_condition)

    # Run the team
    stream = team.run_stream(task="Count to 10.")
    async for message in stream:
        print(message)
    
    # Save the state.
    state = await team.save_state()

    # Load the state to an existing team.
    await team.load_state(state)

    # Run the team again
    model_client.reset()
    stream = team.run_stream(task="Count to 10.")
    async for message in stream:
        print(message)

    # Create a new team, with the same agent names.
    agent3 = AssistantAgent("assistant1", model_client=model_client, system_message="You are a helpful assistant.")
    agent4 = AssistantAgent("assistant2", model_client=model_client, system_message="You are a helpful assistant.")
    new_team = RoundRobinGroupChat([agent3, agent4], runtime=runtime, termination_condition=termination_condition)

    # Load the state to the new team.
    await new_team.load_state(state)

    # Run the new team
    model_client.reset()
    new_stream = new_team.run_stream(task="Count to 10.")
    async for message in new_stream:
        print(message)
    
    # Stop the runtime
    await runtime.stop()

asyncio.run(main())
```

TODOs as future PRs:
1. Documentation.
2. How to handle errors in custom runtime when the agent has exception?

---------

Co-authored-by: Ryan Sweet <rysweet@microsoft.com>

Fix a warning that has been resolved in the latest release.

Added notice for user who are not using Jypter Notebook for the example,
to wrap with asyncio

Line that adds the plugin to the kernel was accidentally removed, which
caused SK to be unable to invoke tools.

Resolves #5731

## Why are these changes needed?

Keyboard focus location was being lost after a copy event. Header anchor
was also not selectable while hidden

Fixes (2), (4), (11), (35)

## Related issue number

#5630 

## Checks

- [ ] I've included any doc changes needed for
<https://microsoft.github.io/autogen/>. See
<https://github.com/microsoft/autogen/blob/main/CONTRIBUTING.md> to
build and test documentation locally.
- [ ] I've added tests (if relevant) corresponding to the changes
introduced in this PR.
- [ ] I've made sure all auto checks have passed.