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Update hdf5_format.cs

tags/v0.110.4-Transformer-Model
Beacontownfc GitHub 2 years ago
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commit
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1 changed files with 354 additions and 354 deletions
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      src/TensorFlowNET.Keras/Saving/hdf5_format.cs

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src/TensorFlowNET.Keras/Saving/hdf5_format.cs View File

@@ -1,354 +1,354 @@
using System;
using System.Collections.Generic;
using System.Text;
using HDF.PInvoke;
using Tensorflow.NumPy;
using HDF5CSharp;
using static Tensorflow.Binding;
using static Tensorflow.KerasApi;
using System.Linq;
using System.Text.RegularExpressions;
namespace Tensorflow.Keras.Saving
{
public class hdf5_format
{
private static int HDF5_OBJECT_HEADER_LIMIT = 64512;
public static void load_model_from_hdf5(string filepath = "", Dictionary<string, object> custom_objects = null, bool compile = false)
{
long root = Hdf5.OpenFile(filepath,true);
load_model_from_hdf5(root, custom_objects, compile);
}
public static void load_model_from_hdf5(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
//long fileId = filepath;
//try
//{
// groupId = H5G.open(fileId, "/");
// (bool success, string[] attrId) = Hdf5.ReadStringAttributes(groupId, "model_config", "");
// H5G.close(groupId);
// if (success == true) {
// Console.WriteLine(attrId[0]);
// }
//}
//catch (Exception ex)
//{
// if (filepath != -1) {
// Hdf5.CloseFile(filepath);
// }
// if (groupId != -1) {
// H5G.close(groupId);
// }
// throw new Exception(ex.ToString());
//}
}
public static void save_model_to_hdf5(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
/// <summary>
/// Preprocess layer weights between different Keras formats.
/// </summary>
/// <param name="layer"></param>
/// <param name="weights"></param>
/// <param name="original_keras_version"></param>
/// <param name="original_backend"></param>
public static List<NDArray> preprocess_weights_for_loading(ILayer layer, List<NDArray> weights, string original_keras_version = null, string original_backend = null)
{
// convert CuDNN layers
return _convert_rnn_weights(layer, weights);
}
/// <summary>
/// Converts weights for RNN layers between native and CuDNN format.
/// </summary>
/// <param name="layer"></param>
/// <param name="weights"></param>
static List<NDArray> _convert_rnn_weights(ILayer layer, List<NDArray> weights)
{
var target_class = layer.GetType().Name;
return weights;
}
public static void save_optimizer_weights_to_hdf5_group(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static void load_optimizer_weights_from_hdf5_group(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static void load_weights_from_hdf5_group(long f, List<ILayer> layers)
{
string original_keras_version = "2.5.0";
string original_backend = null;
var (success, attr) = Hdf5.ReadStringAttributes(f, "keras_version", "", true);
if (success)
original_keras_version = attr.First();
// keras version should be 2.5.0+
var ver_major = int.Parse(original_keras_version.Split('.')[0]);
var ver_minor = int.Parse(original_keras_version.Split('.')[1]);
if (ver_major < 2 || (ver_major == 2 && ver_minor < 5))
throw new ValueError("keras version should be 2.5.0 or later.");
(success, attr) = Hdf5.ReadStringAttributes(f, "backend", "", true);
if (success)
original_backend = attr.First();
var filtered_layers = new List<ILayer>();
foreach (var layer in layers)
{
var weights = _legacy_weights(layer);
if (weights.Count > 0)
filtered_layers.append(layer);
}
string[] layer_names = load_attributes_from_hdf5_group(f, "layer_names");
var filtered_layer_names = new List<string>();
foreach(var name in layer_names)
{
if (!filtered_layers.Select(x => x.Name).Contains(name))
continue;
long g = H5G.open(f, name);
var weight_names = load_attributes_from_hdf5_group(g, "weight_names");
if (weight_names.Count() > 0)
filtered_layer_names.Add(name);
H5G.close(g);
}
layer_names = filtered_layer_names.ToArray();
if (layer_names.Length != filtered_layers.Count())
throw new ValueError("You are trying to load a weight file " +
$"containing {layer_names}" +
$" layers into a model with {filtered_layers.Count} layers.");
var weight_value_tuples = new List<(IVariableV1, NDArray)>();
foreach (var (k, name) in enumerate(layer_names))
{
var weight_values = new List<NDArray>();
long g = H5G.open(f, name);
var weight_names = load_attributes_from_hdf5_group(g, "weight_names");
foreach (var i_ in weight_names)
{
(success, Array result) = Hdf5.ReadDataset<float>(g, i_);
if (success)
weight_values.Add(np.array(result));
}
H5G.close(g);
var layer = filtered_layers[k];
var symbolic_weights = _legacy_weights(layer);
preprocess_weights_for_loading(layer, weight_values, original_keras_version, original_backend);
if (weight_values.Count() != symbolic_weights.Count())
throw new ValueError($"Layer #{k} (named {layer.Name}" +
"in the current model) was found to " +
$"correspond to layer {name} in the save file." +
$"However the new layer {layer.Name} expects " +
$"{symbolic_weights.Count()} weights, but the saved weights have " +
$"{weight_values.Count()} elements.");
weight_value_tuples.AddRange(zip(symbolic_weights, weight_values));
}
keras.backend.batch_set_value(weight_value_tuples);
}
public static void toarrayf4(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static void load_weights_from_hdf5_group_by_name(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static void save_weights_to_hdf5_group(long f, List<ILayer> layers)
{
List<string> layerName=new List<string>();
foreach (var layer in layers)
{
layerName.Add(layer.Name);
}
save_attributes_to_hdf5_group(f, "layer_names", layerName.ToArray());
Hdf5.WriteAttribute(f, "backend", "tensorflow");
Hdf5.WriteAttribute(f, "keras_version", "2.5.0");
foreach (var layer in layers)
{
var weights = _legacy_weights(layer);
if (weights.Count == 0)
continue;
var weight_names = new List<string>();
// weight_values= keras.backend.batch_get_value(weights);
foreach (var weight in weights)
weight_names.Add(weight.Name);
var g = Hdf5.CreateOrOpenGroup(f, Hdf5Utils.NormalizedName(layer.Name));
save_attributes_to_hdf5_group(g, "weight_names", weight_names.ToArray());
foreach (var (name, val) in zip(weight_names, weights))
{
var tensor = val.AsTensor();
if (name.IndexOf("/") > 1)
{
var crDataGroup = g;
string[] name_split = name.Split('/');
for(int i = 0; i < name_split.Length - 1; i++)
{
crDataGroup = Hdf5.CreateOrOpenGroup(crDataGroup, Hdf5Utils.NormalizedName(name_split[i]));
}
WriteDataset(crDataGroup, name_split[name_split.Length - 1], tensor);
Hdf5.CloseGroup(crDataGroup);
}
else
{
WriteDataset(g, name, tensor);
}
}
Hdf5.CloseGroup(g);
}
}
private static void save_attributes_to_hdf5_group(long f, string name, Array data)
{
int num_chunks = 1;
var chunked_data = Split(data, num_chunks);
int getSize = 0;
string getType = data.Length > 0 ? data.GetValue(0).GetType().Name.ToLower() : "string";
switch (getType)
{
case "single":
getSize = sizeof(float);
break;
case "double":
getSize = sizeof(double);
break;
case "string":
getSize = -1;
break;
case "int32":
getSize = sizeof(int);
break;
case "int64":
getSize = sizeof(long);
break;
default:
getSize = -1;
break;
}
int getCount = chunked_data.Count;
if (getSize != -1)
{
num_chunks = (int)Math.Ceiling((double)(getCount * getSize) / HDF5_OBJECT_HEADER_LIMIT);
if (num_chunks > 1) chunked_data = Split(data, num_chunks);
}
if (num_chunks > 1)
{
foreach (var (chunk_id, chunk_data) in enumerate(chunked_data))
WriteAttrs(f, getType, $"{name}{chunk_id}", chunk_data.ToArray());
}
else
{
WriteAttrs(f, getType, name, data);
}
}
private static void WriteDataset(long f, string name, Tensor data)
{
switch (data.dtype)
{
case TF_DataType.TF_FLOAT:
Hdf5.WriteDatasetFromArray<float>(f, name, data.numpy().ToMultiDimArray<float>());
break;
case TF_DataType.TF_DOUBLE:
Hdf5.WriteDatasetFromArray<double>(f, name, data.numpy().ToMultiDimArray<double>());
break;
case TF_DataType.TF_INT32:
Hdf5.WriteDatasetFromArray<int>(f, name, data.numpy().ToMultiDimArray<int>());
break;
case TF_DataType.TF_INT64:
Hdf5.WriteDatasetFromArray<long>(f, name, data.numpy().ToMultiDimArray<long>());
break;
default:
Hdf5.WriteDatasetFromArray<float>(f, name, data.numpy().ToMultiDimArray<float>());
break;
}
}
private static void WriteAttrs(long f,string typename, string name, Array data)
{
switch (typename)
{
case "single":
Hdf5.WriteAttributes<float>(f, name, data);
break;
case "double":
Hdf5.WriteAttributes<double>(f, name, data);
break;
case "string":
Hdf5.WriteAttributes<string>(f, name, data);
break;
case "int32":
Hdf5.WriteAttributes<int>(f, name, data);
break;
case "int64":
Hdf5.WriteAttributes<long>(f, name, data);
break;
default:
Hdf5.WriteAttributes<string>(f, name,data);
break;
}
}
private static List<List<object>> Split(Array list, int chunkSize)
{
var splitList = new List<List<object>>();
var chunkCount = (int)Math.Ceiling((double)list.Length / (double)chunkSize);
for (int c = 0; c < chunkCount; c++)
{
var skip = c * chunkSize;
var take = skip + chunkSize;
var chunk = new List<object>(chunkSize);
for (int e = skip; e < take && e < list.Length; e++)
{
chunk.Add(list.GetValue(e));
}
splitList.Add(chunk);
}
return splitList;
}
public static string[] load_attributes_from_hdf5_group(long group, string name)
{
var (success, attr) = Hdf5.ReadStringAttributes(group, name, "", true);
if (success)
return attr.ToArray();
return null;
}
public static void load_attributes_from_hdf5_group(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static List<IVariableV1> _legacy_weights(ILayer layer)
{
var weights = layer.TrainableWeights.Select(x => x).ToList();
weights.AddRange(layer.NonTrainableWeights);
return weights;
}
}
}
using System;
using System.Collections.Generic;
using System.Text;
using HDF.PInvoke;
using Tensorflow.NumPy;
using HDF5CSharp;
using static Tensorflow.Binding;
using static Tensorflow.KerasApi;
using System.Linq;
using System.Text.RegularExpressions;
namespace Tensorflow.Keras.Saving
{
public class hdf5_format
{
private static int HDF5_OBJECT_HEADER_LIMIT = 64512;
public static void load_model_from_hdf5(string filepath = "", Dictionary<string, object> custom_objects = null, bool compile = false)
{
long root = Hdf5.OpenFile(filepath,true);
load_model_from_hdf5(root, custom_objects, compile);
}
public static void load_model_from_hdf5(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
//long fileId = filepath;
//try
//{
// groupId = H5G.open(fileId, "/");
// (bool success, string[] attrId) = Hdf5.ReadStringAttributes(groupId, "model_config", "");
// H5G.close(groupId);
// if (success == true) {
// Console.WriteLine(attrId[0]);
// }
//}
//catch (Exception ex)
//{
// if (filepath != -1) {
// Hdf5.CloseFile(filepath);
// }
// if (groupId != -1) {
// H5G.close(groupId);
// }
// throw new Exception(ex.ToString());
//}
}
public static void save_model_to_hdf5(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
/// <summary>
/// Preprocess layer weights between different Keras formats.
/// </summary>
/// <param name="layer"></param>
/// <param name="weights"></param>
/// <param name="original_keras_version"></param>
/// <param name="original_backend"></param>
public static List<NDArray> preprocess_weights_for_loading(ILayer layer, List<NDArray> weights, string original_keras_version = null, string original_backend = null)
{
// convert CuDNN layers
return _convert_rnn_weights(layer, weights);
}
/// <summary>
/// Converts weights for RNN layers between native and CuDNN format.
/// </summary>
/// <param name="layer"></param>
/// <param name="weights"></param>
static List<NDArray> _convert_rnn_weights(ILayer layer, List<NDArray> weights)
{
var target_class = layer.GetType().Name;
return weights;
}
public static void save_optimizer_weights_to_hdf5_group(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static void load_optimizer_weights_from_hdf5_group(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static void load_weights_from_hdf5_group(long f, List<ILayer> layers)
{
string original_keras_version = "2.5.0";
string original_backend = null;
var (success, attr) = Hdf5.ReadStringAttributes(f, "keras_version", "", true);
if (success)
original_keras_version = attr.First();
// keras version should be 2.5.0+
var ver_major = int.Parse(original_keras_version.Split('.')[0]);
var ver_minor = int.Parse(original_keras_version.Split('.')[1]);
if (ver_major < 2 || (ver_major == 2 && ver_minor < 5))
throw new ValueError("keras version should be 2.5.0 or later.");
(success, attr) = Hdf5.ReadStringAttributes(f, "backend", "", true);
if (success)
original_backend = attr.First();
var filtered_layers = new List<ILayer>();
foreach (var layer in layers)
{
var weights = _legacy_weights(layer);
if (weights.Count > 0)
filtered_layers.append(layer);
}
string[] layer_names = load_attributes_from_hdf5_group(f, "layer_names");
var filtered_layer_names = new List<string>();
foreach(var name in layer_names)
{
if (!filtered_layers.Select(x => x.Name).Contains(name))
continue;
long g = H5G.open(f, name);
var weight_names = load_attributes_from_hdf5_group(g, "weight_names");
if (weight_names.Count() > 0)
filtered_layer_names.Add(name);
H5G.close(g);
}
layer_names = filtered_layer_names.ToArray();
if (layer_names.Length != filtered_layers.Count())
throw new ValueError("You are trying to load a weight file " +
$"containing {layer_names}" +
$" layers into a model with {filtered_layers.Count} layers.");
var weight_value_tuples = new List<(IVariableV1, NDArray)>();
foreach (var (k, name) in enumerate(layer_names))
{
var weight_values = new List<NDArray>();
long g = H5G.open(f, name);
var weight_names = load_attributes_from_hdf5_group(g, "weight_names");
foreach (var i_ in weight_names)
{
(success, Array result) = Hdf5.ReadDataset<float>(g, i_);
if (success)
weight_values.Add(np.array(result));
}
H5G.close(g);
var layer = filtered_layers[k];
var symbolic_weights = _legacy_weights(layer);
preprocess_weights_for_loading(layer, weight_values, original_keras_version, original_backend);
if (weight_values.Count() != symbolic_weights.Count())
throw new ValueError($"Layer #{k} (named {layer.Name}" +
"in the current model) was found to " +
$"correspond to layer {name} in the save file." +
$"However the new layer {layer.Name} expects " +
$"{symbolic_weights.Count()} weights, but the saved weights have " +
$"{weight_values.Count()} elements.");
weight_value_tuples.AddRange(zip(symbolic_weights, weight_values));
}
keras.backend.batch_set_value(weight_value_tuples);
}
public static void toarrayf4(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static void load_weights_from_hdf5_group_by_name(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static void save_weights_to_hdf5_group(long f, List<ILayer> layers)
{
List<string> layerName=new List<string>();
foreach (var layer in layers)
{
layerName.Add(layer.Name);
}
save_attributes_to_hdf5_group(f, "layer_names", layerName.ToArray());
Hdf5.WriteAttribute(f, "backend", "tensorflow");
Hdf5.WriteAttribute(f, "keras_version", "2.5.0");
foreach (var layer in layers)
{
var weights = _legacy_weights(layer);
if (weights.Count == 0)
continue;
var weight_names = new List<string>();
// weight_values= keras.backend.batch_get_value(weights);
foreach (var weight in weights)
weight_names.Add(weight.Name);
var g = Hdf5.CreateOrOpenGroup(f, Hdf5Utils.NormalizedName(layer.Name));
save_attributes_to_hdf5_group(g, "weight_names", weight_names.ToArray());
foreach (var (name, val) in zip(weight_names, weights))
{
var tensor = val.AsTensor();
if (name.IndexOf("/") > 1)
{
var crDataGroup = g;
string[] name_split = name.Split('/');
for(int i = 0; i < name_split.Length - 1; i++)
{
crDataGroup = Hdf5.CreateOrOpenGroup(crDataGroup, Hdf5Utils.NormalizedName(name_split[i]));
}
WriteDataset(crDataGroup, name_split[name_split.Length - 1], tensor);
Hdf5.CloseGroup(crDataGroup);
}
else
{
WriteDataset(g, name, tensor);
}
}
Hdf5.CloseGroup(g);
}
}
private static void save_attributes_to_hdf5_group(long f, string name, Array data)
{
int num_chunks = 1;
var chunked_data = Split(data, num_chunks);
int getSize = 0;
string getType = data.Length > 0 ? data.GetValue(0).GetType().Name.ToLower() : "string";
switch (getType)
{
case "single":
getSize = sizeof(float);
break;
case "double":
getSize = sizeof(double);
break;
case "string":
getSize = -1;
break;
case "int32":
getSize = sizeof(int);
break;
case "int64":
getSize = sizeof(long);
break;
default:
getSize = -1;
break;
}
int getCount = chunked_data.Count;
if (getSize != -1)
{
num_chunks = (int)Math.Ceiling((double)(getCount * getSize) / HDF5_OBJECT_HEADER_LIMIT);
if (num_chunks > 1) chunked_data = Split(data, num_chunks);
}
if (num_chunks > 1)
{
foreach (var (chunk_id, chunk_data) in enumerate(chunked_data))
WriteAttrs(f, getType, $"{name}{chunk_id}", chunk_data.ToArray());
}
else
{
WriteAttrs(f, getType, name, data);
}
}
private static void WriteDataset(long f, string name, Tensor data)
{
switch (data.dtype)
{
case TF_DataType.TF_FLOAT:
Hdf5.WriteDatasetFromArray<float>(f, name, data.numpy().ToMultiDimArray<float>());
break;
case TF_DataType.TF_DOUBLE:
Hdf5.WriteDatasetFromArray<double>(f, name, data.numpy().ToMultiDimArray<double>());
break;
case TF_DataType.TF_INT32:
Hdf5.WriteDatasetFromArray<int>(f, name, data.numpy().ToMultiDimArray<int>());
break;
case TF_DataType.TF_INT64:
Hdf5.WriteDatasetFromArray<long>(f, name, data.numpy().ToMultiDimArray<long>());
break;
default:
Hdf5.WriteDatasetFromArray<float>(f, name, data.numpy().ToMultiDimArray<float>());
break;
}
}
private static void WriteAttrs(long f,string typename, string name, Array data)
{
switch (typename)
{
case "single":
Hdf5.WriteAttributes<float>(f, name, data);
break;
case "double":
Hdf5.WriteAttributes<double>(f, name, data);
break;
case "string":
Hdf5.WriteAttributes<string>(f, name, data);
break;
case "int32":
Hdf5.WriteAttributes<int>(f, name, data);
break;
case "int64":
Hdf5.WriteAttributes<long>(f, name, data);
break;
default:
Hdf5.WriteAttributes<string>(f, name,data);
break;
}
}
private static List<List<object>> Split(Array list, int chunkSize)
{
var splitList = new List<List<object>>();
var chunkCount = (int)Math.Ceiling((double)list.Length / (double)chunkSize);
for (int c = 0; c < chunkCount; c++)
{
var skip = c * chunkSize;
var take = skip + chunkSize;
var chunk = new List<object>(chunkSize);
for (int e = skip; e < take && e < list.Length; e++)
{
chunk.Add(list.GetValue(e));
}
splitList.Add(chunk);
}
return splitList;
}
public static string[] load_attributes_from_hdf5_group(long group, string name)
{
var (success, attr) = Hdf5.ReadStringAttributes(group, name, "", true);
if (success)
return attr.ToArray();
return null;
}
public static void load_attributes_from_hdf5_group(long filepath = -1, Dictionary<string, object> custom_objects = null, bool compile = false)
{
}
public static List<IVariableV1> _legacy_weights(ILayer layer)
{
var weights = layer.TrainableWeights.Select(x => x).ToList();
weights.AddRange(layer.NonTrainableWeights);
return weights;
}
}
}

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