""" Performance check of AutoGL trainer + PYG dataset """ import os os.environ["AUTOGL_BACKEND"] = "pyg" import random import numpy as np from torch_geometric.datasets import TUDataset from torch_geometric.data import DataLoader from autogl.datasets import utils from autogl.module.train import GraphClassificationFullTrainer from autogl.solver.utils import set_seed import logging logging.basicConfig(level=logging.ERROR) def fixed(**kwargs): return [{ 'parameterName': k, "type": "FIXED", "value": v } for k, v in kwargs.items()] def graph_get_split(dataset, mask, is_loader=True, batch_size=128, num_workers=0): out = getattr(dataset, f'{mask}_split') if is_loader: out = DataLoader(out, batch_size, num_workers=num_workers) return out utils.graph_get_split = graph_get_split if __name__ == '__main__': import argparse parser = argparse.ArgumentParser('pyg trainer') parser.add_argument('--device', type=str, default='cuda') parser.add_argument('--dataset', type=str, choices=['MUTAG', 'COLLAB', 'IMDBBINARY', 'IMDBMULTI', 'NCI1', 'PROTEINS', 'PTC', 'REDDITBINARY', 'REDDITMULTI5K'], default='MUTAG') parser.add_argument('--dataset_seed', type=int, default=2021) parser.add_argument('--batch_size', type=int, default=32) parser.add_argument('--repeat', type=int, default=50) parser.add_argument('--model', type=str, choices=['gin', 'topkpool'], default='gin') parser.add_argument('--lr', type=float, default=0.0001) parser.add_argument('--epoch', type=int, default=100) args = parser.parse_args() # seed = 100 dataset = TUDataset(os.path.expanduser('~/.pyg'), args.dataset) # 1. split dataset [fix split] dataids = list(range(len(dataset))) random.seed(args.dataset_seed) random.shuffle(dataids) fold = int(len(dataset) * 0.1) train_index = dataids[:fold * 8] val_index = dataids[fold * 8: fold * 9] test_index = dataids[fold * 9: ] dataset.train_index = train_index dataset.val_index = val_index dataset.test_index = test_index dataset.train_split = dataset[dataset.train_index] dataset.val_split = dataset[dataset.val_index] dataset.test_split = dataset[dataset.test_index] labels = np.array([data.y.item() for data in dataset.test_split]) accs = [] if args.model == 'gin': model_hp = { # hp from model "num_layers": 5, "hidden": [64,64,64,64], "dropout": 0.5, "act": "relu", "eps": "False", "mlp_layers": 2, "neighbor_pooling_type": "sum", "graph_pooling_type": "sum" } elif args.model == 'topkpool': model_hp = { "ratio": 0.8, "dropout": 0.5, "act": "relu" } from tqdm import tqdm for seed in tqdm(range(args.repeat)): set_seed(seed) trainer = GraphClassificationFullTrainer( model=args.model, device=args.device, init=False, num_features=dataset[0].x.size(1), num_classes=max([data.y.item() for data in dataset]) + 1, loss='nll_loss', feval=('acc') ).duplicate_from_hyper_parameter( { # hp from trainer "max_epoch": args.epoch, "batch_size": args.batch_size, "early_stopping_round": args.epoch + 1, "lr": args.lr, "weight_decay": 0, **model_hp } ) trainer.train(dataset, False) out = trainer.predict(dataset, 'test').detach().cpu().numpy() acc = (out == labels).astype('float').mean() accs.append(acc) print('{:.4f} ~ {:.4f}'.format(np.mean(accs), np.std(accs)))