AutoGL/test/performance/node_classification/pyg/base.py

"""
Performance check of AutoGL model + PYG (trainer + dataset)
"""
import os
import random
import numpy as np
from tqdm import tqdm

import torch
import torch.nn.functional as F
from torch_geometric.datasets import Planetoid
import torch_geometric.transforms as T
from torch_geometric.nn import GCNConv, GATConv, SAGEConv
import logging

logging.basicConfig(level=logging.ERROR)

class GCN(torch.nn.Module):
    def __init__(self, num_features, num_classes):
        super(GCN, self).__init__()
        self.conv1 = GCNConv(num_features, 16)
        self.conv2 = GCNConv(16, num_classes)

    def forward(self, data):
        x, edge_index, edge_weight = data.x, data.edge_index, data.edge_attr
        x = F.relu(self.conv1(x, edge_index, edge_weight))
        x = F.dropout(x, training=self.training)
        x = self.conv2(x, edge_index, edge_weight)
        return F.log_softmax(x, dim=1)

class GAT(torch.nn.Module):
    def __init__(self, num_features, num_classes):
        super(GAT, self).__init__()

        self.conv1 = GATConv(num_features, 8, heads=8, dropout=0.6)
        self.conv2 = GATConv(8 * 8, num_classes, heads=1, concat=False,
                             dropout=0.6)

    def forward(self, data):
        x, edge_index = data.x, data.edge_index
        x = F.dropout(x, p=0.6, training=self.training)
        x = F.elu(self.conv1(x, edge_index))
        x = F.dropout(x, p=0.6, training=self.training)
        x = self.conv2(x, edge_index)
        return F.log_softmax(x, dim=-1)

class SAGE(torch.nn.Module):
    def __init__(self, num_features, hidden_channels, num_layers, num_classes):
        super(SAGE, self).__init__()
        self.num_layers = num_layers
        self.convs = torch.nn.ModuleList()
        for i in range(num_layers):
            inc = outc = hidden_channels
            if i == 0:
                inc = num_features
            if i == num_layers - 1:
                outc = num_classes
            self.convs.append(SAGEConv(inc, outc))

    def forward(self, data):
        x, edge_index = data.x, data.edge_index
        for i, conv in enumerate(self.convs):
            x = conv(x, edge_index)
            if i != self.num_layers - 1:
                x = x.relu()
                x = F.dropout(x, p=0.5, training=self.training)
        return F.log_softmax(x, dim=-1)

def test(model, data, mask):
    model.eval()

    pred = model(data)[mask].max(1)[1]
    acc = pred.eq(data.y[mask]).sum().item() / mask.sum().item()
    return acc

def train(model, data, args):
    optimizer = torch.optim.Adam(model.parameters(), lr=args.lr, weight_decay=args.weight_decay)

    parameters = model.state_dict()
    best_acc = 0.
    for epoch in range(args.epoch):
        model.train()
        optimizer.zero_grad()
        output = model(data)
        loss = F.nll_loss(output[data.train_mask], data.y[data.train_mask])
        loss.backward()
        optimizer.step()

        val_acc = test(model, data, data.val_mask)
        if val_acc > best_acc:
            best_acc = val_acc
            parameters = model.state_dict()
    
    model.load_state_dict(parameters)
    return model

if __name__ == '__main__':

    import argparse
    parser = argparse.ArgumentParser('pyg model')
    parser.add_argument('--device', type=str, default='cuda')
    parser.add_argument('--dataset', type=str, choices=['Cora', 'CiteSeer', 'PubMed'], default='Cora')
    parser.add_argument('--repeat', type=int, default=50)
    parser.add_argument('--model', type=str, choices=['gat', 'gcn', 'sage'], default='gat')
    parser.add_argument('--lr', type=float, default=0.01)
    parser.add_argument('--weight_decay', type=float, default=0.0)
    parser.add_argument('--epoch', type=int, default=200)

    args = parser.parse_args()

    # seed = 100
    dataset = Planetoid(os.path.expanduser('~/.cache-autogl'), args.dataset, transform=T.NormalizeFeatures())
    data = dataset[0].to(args.device)

    accs = []

    for seed in tqdm(range(args.repeat)):
        np.random.seed(seed)
        torch.manual_seed(seed)

        if args.model == 'gat':
            model = GAT(dataset.num_node_features, dataset.num_classes)
        elif args.model == 'gcn':
            model = GCN(dataset.num_node_features, dataset.num_classes)
        elif args.model == 'sage':
            model = SAGE(dataset.num_node_features, 64, 2, dataset.num_classes)
        
        model.to(args.device)

        train(model, data, args)
        acc = test(model, data, data.test_mask)
        accs.append(acc)
    print('{:.4f} ~ {:.4f}'.format(np.mean(accs), np.std(accs)))