| @@ -0,0 +1,199 @@ | |||
| # Notes on OpenBLAS usage | |||
| ## Usage | |||
| #### Program is Terminated. Because you tried to allocate too many memory regions | |||
| In OpenBLAS, we mange a pool of memory buffers and allocate the number of | |||
| buffers as the following. | |||
| ``` | |||
| #define NUM_BUFFERS (MAX_CPU_NUMBER * 2) | |||
| ``` | |||
| This error indicates that the program exceeded the number of buffers. | |||
| Please build OpenBLAS with larger `NUM_THREADS`. For example, `make | |||
| NUM_THREADS=32` or `make NUM_THREADS=64`. In `Makefile.system`, we will set | |||
| `MAX_CPU_NUMBER=NUM_THREADS`. | |||
| #### How can I use OpenBLAS in multi-threaded applications? | |||
| If your application is already multi-threaded, it will conflict with OpenBLAS | |||
| multi-threading. Thus, you must set OpenBLAS to use single thread in any of the | |||
| following ways: | |||
| * `export OPENBLAS_NUM_THREADS=1` in the environment variables. | |||
| * Call `openblas_set_num_threads(1)` in the application on runtime. | |||
| * Build OpenBLAS single thread version, e.g. `make USE_THREAD=0` | |||
| If the application is parallelized by OpenMP, please use OpenBLAS built with | |||
| `USE_OPENMP=1` | |||
| #### How to choose TARGET manually at runtime when compiled with DYNAMIC_ARCH | |||
| The environment variable which control the kernel selection is | |||
| `OPENBLAS_CORETYPE` (see `driver/others/dynamic.c`) e.g. `export | |||
| OPENBLAS_CORETYPE=Haswell` and the function `char* openblas_get_corename()` | |||
| returns the used target. | |||
| #### How could I disable OpenBLAS threading affinity on runtime? | |||
| You can define the `OPENBLAS_MAIN_FREE` or `GOTOBLAS_MAIN_FREE` environment | |||
| variable to disable threading affinity on runtime. For example, before the | |||
| running, | |||
| ``` | |||
| export OPENBLAS_MAIN_FREE=1 | |||
| ``` | |||
| Alternatively, you can disable affinity feature with enabling `NO_AFFINITY=1` | |||
| in `Makefile.rule`. | |||
| ## Linking with the library | |||
| * Link with shared library | |||
| `gcc -o test test.c -I /your_path/OpenBLAS/include/ -L/your_path/OpenBLAS/lib -lopenblas` | |||
| If the library is multithreaded, please add `-lpthread`. If the library | |||
| contains LAPACK functions, please add `-lgfortran` or other Fortran libs. | |||
| * Link with static library | |||
| `gcc -o test test.c /your/path/libopenblas.a` | |||
| You can download `test.c` from https://gist.github.com/xianyi/5780018 | |||
| On Linux, if OpenBLAS was compiled with threading support (`USE_THREAD=1` by | |||
| default), custom programs statically linked against `libopenblas.a` should also | |||
| link with the pthread library e.g.: | |||
| ``` | |||
| gcc -static -I/opt/OpenBLAS/include -L/opt/OpenBLAS/lib -o my_program my_program.c -lopenblas -lpthread | |||
| ``` | |||
| Failing to add the `-lpthread` flag will cause errors such as: | |||
| ``` | |||
| /opt/OpenBLAS/libopenblas.a(memory.o): In function `_touch_memory': | |||
| memory.c:(.text+0x15): undefined reference to `pthread_mutex_lock' | |||
| memory.c:(.text+0x41): undefined reference to `pthread_mutex_unlock' | |||
| ... | |||
| ``` | |||
| ## Code examples | |||
| #### Call CBLAS interface | |||
| This example shows calling cblas_dgemm in C. https://gist.github.com/xianyi/6930656 | |||
| ``` | |||
| #include <cblas.h> | |||
| #include <stdio.h> | |||
| void main() | |||
| { | |||
| int i=0; | |||
| double A[6] = {1.0,2.0,1.0,-3.0,4.0,-1.0}; | |||
| double B[6] = {1.0,2.0,1.0,-3.0,4.0,-1.0}; | |||
| double C[9] = {.5,.5,.5,.5,.5,.5,.5,.5,.5}; | |||
| cblas_dgemm(CblasColMajor, CblasNoTrans, CblasTrans,3,3,2,1,A, 3, B, 3,2,C,3); | |||
| for(i=0; i<9; i++) | |||
| printf("%lf ", C[i]); | |||
| printf("\n"); | |||
| } | |||
| ``` | |||
| `gcc -o test_cblas_open test_cblas_dgemm.c -I /your_path/OpenBLAS/include/ -L/your_path/OpenBLAS/lib -lopenblas -lpthread -lgfortran` | |||
| #### Call BLAS Fortran interface | |||
| This example shows calling dgemm Fortran interface in C. https://gist.github.com/xianyi/5780018 | |||
| ``` | |||
| #include "stdio.h" | |||
| #include "stdlib.h" | |||
| #include "sys/time.h" | |||
| #include "time.h" | |||
| extern void dgemm_(char*, char*, int*, int*,int*, double*, double*, int*, double*, int*, double*, double*, int*); | |||
| int main(int argc, char* argv[]) | |||
| { | |||
| int i; | |||
| printf("test!\n"); | |||
| if(argc<4){ | |||
| printf("Input Error\n"); | |||
| return 1; | |||
| } | |||
| int m = atoi(argv[1]); | |||
| int n = atoi(argv[2]); | |||
| int k = atoi(argv[3]); | |||
| int sizeofa = m * k; | |||
| int sizeofb = k * n; | |||
| int sizeofc = m * n; | |||
| char ta = 'N'; | |||
| char tb = 'N'; | |||
| double alpha = 1.2; | |||
| double beta = 0.001; | |||
| struct timeval start,finish; | |||
| double duration; | |||
| double* A = (double*)malloc(sizeof(double) * sizeofa); | |||
| double* B = (double*)malloc(sizeof(double) * sizeofb); | |||
| double* C = (double*)malloc(sizeof(double) * sizeofc); | |||
| srand((unsigned)time(NULL)); | |||
| for (i=0; i<sizeofa; i++) | |||
| A[i] = i%3+1;//(rand()%100)/10.0; | |||
| for (i=0; i<sizeofb; i++) | |||
| B[i] = i%3+1;//(rand()%100)/10.0; | |||
| for (i=0; i<sizeofc; i++) | |||
| C[i] = i%3+1;//(rand()%100)/10.0; | |||
| //#if 0 | |||
| printf("m=%d,n=%d,k=%d,alpha=%lf,beta=%lf,sizeofc=%d\n",m,n,k,alpha,beta,sizeofc); | |||
| gettimeofday(&start, NULL); | |||
| dgemm_(&ta, &tb, &m, &n, &k, &alpha, A, &m, B, &k, &beta, C, &m); | |||
| gettimeofday(&finish, NULL); | |||
| duration = ((double)(finish.tv_sec-start.tv_sec)*1000000 + (double)(finish.tv_usec-start.tv_usec)) / 1000000; | |||
| double gflops = 2.0 * m *n*k; | |||
| gflops = gflops/duration*1.0e-6; | |||
| FILE *fp; | |||
| fp = fopen("timeDGEMM.txt", "a"); | |||
| fprintf(fp, "%dx%dx%d\t%lf s\t%lf MFLOPS\n", m, n, k, duration, gflops); | |||
| fclose(fp); | |||
| free(A); | |||
| free(B); | |||
| free(C); | |||
| return 0; | |||
| } | |||
| ``` | |||
| ` gcc -o time_dgemm time_dgemm.c /your/path/libopenblas.a` | |||
| ` ./time_dgemm <m> <n> <k> ` | |||
| ## Troubleshooting | |||
| * Please read [Faq](https://github.com/xianyi/OpenBLAS/wiki/Faq) at first. | |||
| * Please use gcc version 4.6 and above to compile Sandy Bridge AVX kernels on Linux/MingW/BSD. | |||
| * Please use Clang version 3.1 and above to compile the library on Sandy Bridge microarchitecture. The Clang 3.0 will generate the wrong AVX binary code. | |||
| * The number of CPUs/Cores should less than or equal to 256. On Linux x86_64(amd64), there is experimental support for up to 1024 CPUs/Cores and 128 numa nodes if you build the library with BIGNUMA=1. | |||
| * OpenBLAS does not set processor affinity by default. On Linux, you can enable processor affinity by commenting the line NO_AFFINITY=1 in Makefile.rule. But this may cause [the conflict with R parallel](https://stat.ethz.ch/pipermail/r-sig-hpc/2012-April/001348.html). | |||
| * On Loongson 3A. make test would be failed because of pthread_create error. The error code is EAGAIN. However, it will be OK when you run the same testcase on shell. | |||
| ## BLAS reference manual | |||
| If you want to understand every BLAS function and definition, please read | |||
| [Intel MKL reference manual](https://software.intel.com/sites/products/documentation/doclib/iss/2013/mkl/mklman/GUID-F7ED9FB8-6663-4F44-A62B-61B63C4F0491.htm) | |||
| or [netlib.org](http://netlib.org/blas/) | |||
| Here are [OpenBLAS extension functions](https://github.com/xianyi/OpenBLAS/wiki/OpenBLAS-Extensions) | |||
| ## How to reference OpenBLAS. | |||
| You can reference our [papers](https://github.com/xianyi/OpenBLAS/wiki/publications). | |||
| Alternatively, you can cite the OpenBLAS homepage http://www.openblas.net directly. | |||