| @@ -18,6 +18,7 @@ | |||
| from ..primitive import PrimitiveWithInfer, prim_attr_register | |||
| from ..._checkparam import Validator as validator | |||
| from ...common import dtype as mstype | |||
| from ..._checkparam import Rel | |||
| class BondForce(PrimitiveWithInfer): | |||
| @@ -50,12 +51,30 @@ class BondForce(PrimitiveWithInfer): | |||
| ``GPU`` | |||
| Examples: | |||
| """ | |||
| @prim_attr_register | |||
| def __init__(self, bond_numbers): | |||
| self.bond_numbers = bond_numbers | |||
| self.init_prim_io_names(inputs=['uint_crd_f', 'scaler_f', 'atom_a', 'atom_b', 'bond_k', 'bond_r0'], | |||
| outputs=['frc_f']) | |||
| self.add_prim_attr('bond_numbers', self.bond_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, bond_k_shape, bond_r0_shape): | |||
| cls_name = self.name | |||
| # N = uint_crd_f_shape[0] | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| bond_k_shape[0], M, Rel.EQ, "bond_k_shape", cls_name) | |||
| validator.check_int( | |||
| bond_r0_shape[0], M, Rel.EQ, "bond_r0_shape", cls_name) | |||
| return uint_crd_f_shape | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, bond_k_type, bond_r0_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| validator.check_tensor_dtype_valid('scaler_f_type', scaler_f_type, [mstype.float32], self.name) | |||
| @@ -81,6 +100,11 @@ class BondEnergy(PrimitiveWithInfer): | |||
| Inputs: | |||
| Same as operator BondForce(). | |||
| .. math:: | |||
| dr = (x_1-x_2, y_1-y_2, z_1-z_2) | |||
| E = k*(|dr| - r_0)^2 | |||
| Outputs: | |||
| - **bond_ene** (Tensor, float32) - [M, 1], the harmonic potential energy | |||
| for each bond. | |||
| @@ -89,12 +113,31 @@ class BondEnergy(PrimitiveWithInfer): | |||
| ``GPU`` | |||
| Examples: | |||
| """ | |||
| @prim_attr_register | |||
| def __init__(self, bond_numbers): | |||
| self.bond_numbers = bond_numbers | |||
| self.init_prim_io_names(inputs=['uint_crd_f', 'scaler_f', 'atom_a', 'atom_b', 'bond_k', 'bond_r0'], | |||
| outputs=['bond_ene']) | |||
| self.add_prim_attr('bond_numbers', self.bond_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, bond_k_shape, bond_r0_shape): | |||
| cls_name = self.name | |||
| # N = uint_crd_f_shape[0] | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| bond_k_shape[0], M, Rel.EQ, "bond_k_shape", cls_name) | |||
| validator.check_int( | |||
| bond_r0_shape[0], M, Rel.EQ, "bond_r0_shape", cls_name) | |||
| return bond_k_shape | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, bond_k_type, bond_r0_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| validator.check_tensor_dtype_valid('scaler_f_type', scaler_f_type, [mstype.float32], self.name) | |||
| @@ -125,12 +168,30 @@ class BondAtomEnergy(PrimitiveWithInfer): | |||
| ``GPU`` | |||
| Examples: | |||
| """ | |||
| @prim_attr_register | |||
| def __init__(self, bond_numbers): | |||
| self.bond_numbers = bond_numbers | |||
| self.init_prim_io_names(inputs=['uint_crd_f', 'scaler_f', 'atom_a', 'atom_b', 'bond_k', 'bond_r0'], | |||
| outputs=['atom_ene']) | |||
| self.add_prim_attr('bond_numbers', self.bond_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, bond_k_shape, bond_r0_shape): | |||
| cls_name = self.name | |||
| N = uint_crd_f_shape[0] | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| bond_k_shape[0], M, Rel.EQ, "bond_k_shape", cls_name) | |||
| validator.check_int( | |||
| bond_r0_shape[0], M, Rel.EQ, "bond_r0_shape", cls_name) | |||
| return [N,] | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, bond_k_type, bond_r0_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| validator.check_tensor_dtype_valid('scaler_f_type', scaler_f_type, [mstype.float32], self.name) | |||
| @@ -167,13 +228,28 @@ class BondForceWithAtomEnergy(PrimitiveWithInfer): | |||
| self.init_prim_io_names(inputs=['uint_crd_f', 'scaler_f', 'atom_a', 'atom_b', 'bond_k', 'bond_r0'], | |||
| outputs=['frc_f', 'atom_e']) | |||
| self.add_prim_attr('bond_numbers', self.bond_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, bond_k_shape, bond_r0_shape): | |||
| cls_name = self.name | |||
| N = uint_crd_f_shape[0] | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| bond_k_shape[0], M, Rel.EQ, "bond_k_shape", cls_name) | |||
| validator.check_int( | |||
| bond_r0_shape[0], M, Rel.EQ, "bond_r0_shape", cls_name) | |||
| return uint_crd_f_shape, [N,] | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, bond_k_type, bond_r0_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| validator.check_tensor_dtype_valid('scaler_f_type', scaler_f_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('atom_a_type', atom_a_type, [mstype.int32], self.name) | |||
| validator.check_tensor_dtype_valid('atom_b_type', atom_b_type, [mstype.int32], self.name) | |||
| validator.check_tensor_dtype_valid('bond_k_type', bond_k_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('bond_r0_type', bond_r0_type, [mstype.float32], self.name) | |||
| return bond_r0_type, bond_r0_type | |||
| @@ -213,17 +289,33 @@ class BondForceWithAtomVirial(PrimitiveWithInfer): | |||
| self.init_prim_io_names(inputs=['uint_crd_f', 'scaler_f', 'atom_a', 'atom_b', 'bond_k', 'bond_r0'], | |||
| outputs=['frc_f', 'atom_v']) | |||
| self.add_prim_attr('bond_numbers', self.bond_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, bond_k_shape, bond_r0_shape): | |||
| cls_name = self.name | |||
| N = uint_crd_f_shape[0] | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| bond_k_shape[0], M, Rel.EQ, "bond_k_shape", cls_name) | |||
| validator.check_int( | |||
| bond_r0_shape[0], M, Rel.EQ, "bond_r0_shape", cls_name) | |||
| return uint_crd_f_shape, [N,] | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, bond_k_type, bond_r0_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| validator.check_tensor_dtype_valid('scaler_f_type', scaler_f_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('atom_a_type', atom_a_type, [mstype.int32], self.name) | |||
| validator.check_tensor_dtype_valid('atom_b_type', atom_b_type, [mstype.int32], self.name) | |||
| validator.check_tensor_dtype_valid('bond_k_type', bond_k_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('bond_r0_type', bond_r0_type, [mstype.float32], self.name) | |||
| return bond_r0_type, bond_r0_type | |||
| class DihedralForce(PrimitiveWithInfer): | |||
| """ | |||
| DihedralForce: | |||
| @@ -259,18 +351,18 @@ class DihedralForce(PrimitiveWithInfer): | |||
| Inputs: | |||
| - **uint_crd_f** (Tensor, uint32) - [N, 3], the unsigned int coordinates | |||
| value of each atom. | |||
| - **scalar_f** (Tensor, float32) - [3, 1], the 3-D scale factor between | |||
| - **scalar_f** (Tensor, float32) - [3, ], the 3-D scale factor between | |||
| the real space float coordinates and the unsigned int coordinates. | |||
| - **atom_a** (Tensor, int32) - [M, 1], the 1st atom index of each dihedral. | |||
| - **atom_b** (Tensor, int32) - [M, 1], the 2nd atom index of each dihedral. | |||
| - **atom_c** (Tensor, int32) - [M, 1], the 3rd atom index of each dihedral. | |||
| - **atom_d** (Tensor, int32) - [M, 1], the 4th atom index of each dihedral. | |||
| - **atom_a** (Tensor, int32) - [M, ], the 1st atom index of each dihedral. | |||
| - **atom_b** (Tensor, int32) - [M, ], the 2nd atom index of each dihedral. | |||
| - **atom_c** (Tensor, int32) - [M, ], the 3rd atom index of each dihedral. | |||
| - **atom_d** (Tensor, int32) - [M, ], the 4th atom index of each dihedral. | |||
| 4 atoms are connected in the form a-b-c-d. | |||
| - **ipn** (Tensor, int32) - [M, 1], the period of dihedral angle of each dihedral. | |||
| - **pk** (Tensor, float32) - [M, 1], the force constant of each dihedral. | |||
| - **gamc** (Tensor, float32) - [M, 1], k*cos(phi_0) of each dihedral. | |||
| - **gams** (Tensor, float32) - [M, 1], k*sin(phi_0) of each dihedral. | |||
| - **pn** (Tensor, float32) - [M, 1], the floating point form of ipn. | |||
| - **ipn** (Tensor, int32) - [M, ], the period of dihedral angle of each dihedral. | |||
| - **pk** (Tensor, float32) - [M, ], the force constant of each dihedral. | |||
| - **gamc** (Tensor, float32) - [M, ], k*cos(phi_0) of each dihedral. | |||
| - **gams** (Tensor, float32) - [M, ], k*sin(phi_0) of each dihedral. | |||
| - **pn** (Tensor, float32) - [M, ], the floating point form of ipn. | |||
| Outputs: | |||
| - **frc_f** (Tensor, float32) - [N, 3], the force felt by each atom. | |||
| @@ -289,6 +381,29 @@ class DihedralForce(PrimitiveWithInfer): | |||
| outputs=['frc_f']) | |||
| self.add_prim_attr('dihedral_numbers', self.dihedral_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, atom_c_shape, atom_d_shape, | |||
| ipn_shape, pk_shape, gamc_shape, gams_shape, pn_shape): | |||
| cls_name = self.name | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_a_shape[0], M, Rel.EQ, "atom_a_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| atom_c_shape[0], M, Rel.EQ, "atom_c_shape", cls_name) | |||
| validator.check_int( | |||
| atom_d_shape[0], M, Rel.EQ, "atom_d_shape", cls_name) | |||
| validator.check_int(ipn_shape[0], M, Rel.EQ, "ipn_shape", cls_name) | |||
| validator.check_int(pk_shape[0], M, Rel.EQ, "pk_shape", cls_name) | |||
| validator.check_int(gamc_shape[0], M, Rel.EQ, "gamc_shape", cls_name) | |||
| validator.check_int(gams_shape[0], M, Rel.EQ, "gams_shape", cls_name) | |||
| validator.check_int(pn_shape[0], M, Rel.EQ, "pn_shape", cls_name) | |||
| return uint_crd_f_shape | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, atom_c_type, atom_d_type, | |||
| ipn_type, pk_type, gamc_type, gams_type, pn_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| @@ -302,7 +417,6 @@ class DihedralForce(PrimitiveWithInfer): | |||
| validator.check_tensor_dtype_valid('gamc_type', gamc_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('gams_type', gams_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('pn_type', pn_type, [mstype.float32], self.name) | |||
| return pn_type | |||
| @@ -321,7 +435,7 @@ class DihedralEnergy(PrimitiveWithInfer): | |||
| Same as operator DihedralForce(). | |||
| Outputs: | |||
| - **ene** (Tensor, float32) - [M, 1], the potential energy for each | |||
| - **ene** (Tensor, float32) - [M, ], the potential energy for each | |||
| dihedral term. | |||
| Supported Platforms: | |||
| @@ -338,6 +452,29 @@ class DihedralEnergy(PrimitiveWithInfer): | |||
| outputs=['ene']) | |||
| self.add_prim_attr('dihedral_numbers', self.dihedral_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, atom_c_shape, atom_d_shape, | |||
| ipn_shape, pk_shape, gamc_shape, gams_shape, pn_shape): | |||
| cls_name = self.name | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_a_shape[0], M, Rel.EQ, "atom_a_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| atom_c_shape[0], M, Rel.EQ, "atom_c_shape", cls_name) | |||
| validator.check_int( | |||
| atom_d_shape[0], M, Rel.EQ, "atom_d_shape", cls_name) | |||
| validator.check_int(ipn_shape[0], M, Rel.EQ, "ipn_shape", cls_name) | |||
| validator.check_int(pk_shape[0], M, Rel.EQ, "pk_shape", cls_name) | |||
| validator.check_int(gamc_shape[0], M, Rel.EQ, "gamc_shape", cls_name) | |||
| validator.check_int(gams_shape[0], M, Rel.EQ, "gams_shape", cls_name) | |||
| validator.check_int(pn_shape[0], M, Rel.EQ, "pn_shape", cls_name) | |||
| return [M,] | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, atom_c_type, atom_d_type, | |||
| ipn_type, pk_type, gamc_type, gams_type, pn_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| @@ -351,7 +488,6 @@ class DihedralEnergy(PrimitiveWithInfer): | |||
| validator.check_tensor_dtype_valid('gamc_type', gamc_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('gams_type', gams_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('pn_type', pn_type, [mstype.float32], self.name) | |||
| return pn_type | |||
| @@ -368,7 +504,7 @@ class DihedralAtomEnergy(PrimitiveWithInfer): | |||
| Same as operator DihedralEnergy(). | |||
| Outputs: | |||
| - **ene** (Tensor, float32) - [N, 1], the accumulated potential | |||
| - **ene** (Tensor, float32) - [N, ], the accumulated potential | |||
| energy for each atom. | |||
| Supported Platforms: | |||
| @@ -385,6 +521,30 @@ class DihedralAtomEnergy(PrimitiveWithInfer): | |||
| outputs=['ene']) | |||
| self.add_prim_attr('dihedral_numbers', self.dihedral_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, atom_c_shape, atom_d_shape, | |||
| ipn_shape, pk_shape, gamc_shape, gams_shape, pn_shape): | |||
| cls_name = self.name | |||
| N = uint_crd_f_shape[0] | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_a_shape[0], M, Rel.EQ, "atom_a_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| atom_c_shape[0], M, Rel.EQ, "atom_c_shape", cls_name) | |||
| validator.check_int( | |||
| atom_d_shape[0], M, Rel.EQ, "atom_d_shape", cls_name) | |||
| validator.check_int(ipn_shape[0], M, Rel.EQ, "ipn_shape", cls_name) | |||
| validator.check_int(pk_shape[0], M, Rel.EQ, "pk_shape", cls_name) | |||
| validator.check_int(gamc_shape[0], M, Rel.EQ, "gamc_shape", cls_name) | |||
| validator.check_int(gams_shape[0], M, Rel.EQ, "gams_shape", cls_name) | |||
| validator.check_int(pn_shape[0], M, Rel.EQ, "pn_shape", cls_name) | |||
| return [N,] | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, atom_c_type, atom_d_type, | |||
| ipn_type, pk_type, gamc_type, gams_type, pn_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| @@ -398,7 +558,6 @@ class DihedralAtomEnergy(PrimitiveWithInfer): | |||
| validator.check_tensor_dtype_valid('gamc_type', gamc_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('gams_type', gams_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('pn_type', pn_type, [mstype.float32], self.name) | |||
| return pn_type | |||
| @@ -415,7 +574,7 @@ class DihedralForceWithAtomEnergy(PrimitiveWithInfer): | |||
| Outputs: | |||
| - **frc_f** (Tensor, float32) - [N, 3], same as operator DihedralForce(). | |||
| - **ene** (Tensor, float32) - [N, 1], same as operator DihedralAtomEnergy(). | |||
| - **ene** (Tensor, float32) - [N, ], same as operator DihedralAtomEnergy(). | |||
| Supported Platforms: | |||
| ``GPU`` | |||
| @@ -431,6 +590,30 @@ class DihedralForceWithAtomEnergy(PrimitiveWithInfer): | |||
| outputs=['frc_f', 'ene']) | |||
| self.add_prim_attr('dihedral_numbers', self.dihedral_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, atom_c_shape, atom_d_shape, | |||
| ipn_shape, pk_shape, gamc_shape, gams_shape, pn_shape): | |||
| cls_name = self.name | |||
| N = uint_crd_f_shape[0] | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_a_shape[0], M, Rel.EQ, "atom_a_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| atom_c_shape[0], M, Rel.EQ, "atom_c_shape", cls_name) | |||
| validator.check_int( | |||
| atom_d_shape[0], M, Rel.EQ, "atom_d_shape", cls_name) | |||
| validator.check_int(ipn_shape[0], M, Rel.EQ, "ipn_shape", cls_name) | |||
| validator.check_int(pk_shape[0], M, Rel.EQ, "pk_shape", cls_name) | |||
| validator.check_int(gamc_shape[0], M, Rel.EQ, "gamc_shape", cls_name) | |||
| validator.check_int(gams_shape[0], M, Rel.EQ, "gams_shape", cls_name) | |||
| validator.check_int(pn_shape[0], M, Rel.EQ, "pn_shape", cls_name) | |||
| return uint_crd_f_shape, [N,] | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, atom_c_type, atom_d_type, | |||
| ipn_type, pk_type, gamc_type, gams_type, pn_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| @@ -444,7 +627,6 @@ class DihedralForceWithAtomEnergy(PrimitiveWithInfer): | |||
| validator.check_tensor_dtype_valid('gamc_type', gamc_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('gams_type', gams_type, [mstype.float32], self.name) | |||
| validator.check_tensor_dtype_valid('pn_type', pn_type, [mstype.float32], self.name) | |||
| return pn_type, pn_type | |||
| @@ -470,14 +652,14 @@ class AngleForce(PrimitiveWithInfer): | |||
| Inputs: | |||
| - **uint_crd_f** (Tensor, uint32) - [N, 3], the unsigned int coordinate | |||
| value of each atom. | |||
| - **scaler_f** (Tensor, float32) - [3, 1], the 3-D scale factor between | |||
| - **scaler_f** (Tensor, float32) - [3, ], the 3-D scale factor between | |||
| the real space float coordinates and the unsigned int coordinates. | |||
| - **atom_a** (Tensor, int32) - [M, 1], the 1st atom index of each angle. | |||
| - **atom_b** (Tensor, int32) - [M, 1], the 2nd and the central atom index | |||
| - **atom_a** (Tensor, int32) - [M, ], the 1st atom index of each angle. | |||
| - **atom_b** (Tensor, int32) - [M, ], the 2nd and the central atom index | |||
| of each angle. | |||
| - **atom_c** (Tensor, int32) - [M, 1], the 3rd atom index of each angle. | |||
| - **angle_k** (Tensor, float32) - [M, 1], the force constant for each angle. | |||
| - **angle_theta0** (Tensor, float32) - [M, 1], the equilibrium position value | |||
| - **atom_c** (Tensor, int32) - [M, ], the 3rd atom index of each angle. | |||
| - **angle_k** (Tensor, float32) - [M, ], the force constant for each angle. | |||
| - **angle_theta0** (Tensor, float32) - [M, ], the equilibrium position value | |||
| for each angle. | |||
| Outputs: | |||
| @@ -497,6 +679,26 @@ class AngleForce(PrimitiveWithInfer): | |||
| outputs=['frc_f']) | |||
| self.add_prim_attr('angle_numbers', self.angle_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, atom_c_shape, angle_k_shape, | |||
| angle_theta0_shape): | |||
| cls_name = self.name | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_a_shape[0], M, Rel.EQ, "atom_a_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| atom_c_shape[0], M, Rel.EQ, "atom_c_shape", cls_name) | |||
| validator.check_int( | |||
| angle_k_shape[0], M, Rel.EQ, "angle_k_shape", cls_name) | |||
| validator.check_int( | |||
| angle_theta0_shape[0], M, Rel.EQ, "angle_theta0_shape", cls_name) | |||
| return uint_crd_f_shape | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, atom_c_type, angle_k_type, | |||
| angle_theta0_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| @@ -526,7 +728,7 @@ class AngleEnergy(PrimitiveWithInfer): | |||
| Same as operator AngleForce(). | |||
| Outputs: | |||
| - **ene** (Tensor, float32) - [M, 1], the potential energy for | |||
| - **ene** (Tensor, float32) - [M, ], the potential energy for | |||
| each angle term. | |||
| Supported Platforms: | |||
| @@ -543,6 +745,26 @@ class AngleEnergy(PrimitiveWithInfer): | |||
| outputs=['ene']) | |||
| self.add_prim_attr('angle_numbers', self.angle_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, atom_c_shape, angle_k_shape, | |||
| angle_theta0_shape): | |||
| cls_name = self.name | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_a_shape[0], M, Rel.EQ, "atom_a_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| atom_c_shape[0], M, Rel.EQ, "atom_c_shape", cls_name) | |||
| validator.check_int( | |||
| angle_k_shape[0], M, Rel.EQ, "angle_k_shape", cls_name) | |||
| validator.check_int( | |||
| angle_theta0_shape[0], M, Rel.EQ, "angle_theta0_shape", cls_name) | |||
| return [M,] | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, atom_c_type, angle_k_type, | |||
| angle_theta0_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| @@ -568,7 +790,7 @@ class AngleAtomEnergy(PrimitiveWithInfer): | |||
| Same as operator AngleForce(). | |||
| Outputs: | |||
| - **ene** (Tensor, float32) - [N, 1], the accumulated potential energy | |||
| - **ene** (Tensor, float32) - [N, ], the accumulated potential energy | |||
| for each atom. | |||
| Supported Platforms: | |||
| @@ -585,6 +807,27 @@ class AngleAtomEnergy(PrimitiveWithInfer): | |||
| outputs=['ene']) | |||
| self.add_prim_attr('angle_numbers', self.angle_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, atom_c_shape, angle_k_shape, | |||
| angle_theta0_shape): | |||
| cls_name = self.name | |||
| N = uint_crd_f_shape[0] | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_a_shape[0], M, Rel.EQ, "atom_a_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| atom_c_shape[0], M, Rel.EQ, "atom_c_shape", cls_name) | |||
| validator.check_int( | |||
| angle_k_shape[0], M, Rel.EQ, "angle_k_shape", cls_name) | |||
| validator.check_int( | |||
| angle_theta0_shape[0], M, Rel.EQ, "angle_theta0_shape", cls_name) | |||
| return [N,] | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, atom_c_type, angle_k_type, | |||
| angle_theta0_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||
| @@ -610,7 +853,7 @@ class AngleForceWithAtomEnergy(PrimitiveWithInfer): | |||
| Outputs: | |||
| - **frc_f** (Tensor, float32) - [N, 3], same as operator AngleForce(). | |||
| - **ene** (Tensor, float) - [N, 1], same as operator AngleAtomEnergy(). | |||
| - **ene** (Tensor, float) - [N, ], same as operator AngleAtomEnergy(). | |||
| Supported Platforms: | |||
| ``GPU`` | |||
| @@ -626,6 +869,27 @@ class AngleForceWithAtomEnergy(PrimitiveWithInfer): | |||
| outputs=['frc_f', 'ene']) | |||
| self.add_prim_attr('angle_numbers', self.angle_numbers) | |||
| def infer_shape(self, uint_crd_f_shape, scaler_f_shape, atom_a_shape, atom_b_shape, atom_c_shape, angle_k_shape, | |||
| angle_theta0_shape): | |||
| cls_name = self.name | |||
| N = uint_crd_f_shape[0] | |||
| M = atom_a_shape[0] | |||
| validator.check_int( | |||
| uint_crd_f_shape[1], 3, Rel.EQ, "uint_crd_f_shape", cls_name) | |||
| validator.check_int( | |||
| scaler_f_shape[0], 3, Rel.EQ, "scaler_f_shape", cls_name) | |||
| validator.check_int( | |||
| atom_a_shape[0], M, Rel.EQ, "atom_a_shape", cls_name) | |||
| validator.check_int( | |||
| atom_b_shape[0], M, Rel.EQ, "atom_b_shape", cls_name) | |||
| validator.check_int( | |||
| atom_c_shape[0], M, Rel.EQ, "atom_c_shape", cls_name) | |||
| validator.check_int( | |||
| angle_k_shape[0], M, Rel.EQ, "angle_k_shape", cls_name) | |||
| validator.check_int( | |||
| angle_theta0_shape[0], M, Rel.EQ, "angle_theta0_shape", cls_name) | |||
| return uint_crd_f_shape, [N,] | |||
| def infer_dtype(self, uint_crd_f_dtype, scaler_f_type, atom_a_type, atom_b_type, atom_c_type, angle_k_type, | |||
| angle_theta0_type): | |||
| validator.check_tensor_dtype_valid('uint_crd_f_dtype', uint_crd_f_dtype, [mstype.uint32], self.name) | |||